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PLM4_65_coex_sep16_scaffold_1839

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_1839_1
unknown

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1..552
DNA (552bp) protein (184aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_1839_2
Spiribacter sp. UAH-SP71, Spiribacter, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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793..1392
DNA (600bp) protein (200aa)
RNA polymerase sigma factor AlgU Tax=Spiribacter sp. UAH-SP71 RepID=U5T775_9GAMM
RNA polymerase sigma factor AlgU
RNA polymerase sigma factor AlgU {ECO:0000313|EMBL:AGY92213.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Spiribacter.;" source="Spiribacter sp. UAH-SP71.;"
PLM4_65_coex_sep16_scaffold_1839_3
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1490..2131
DNA (642bp) protein (214aa)
Anti sigma-E protein, RseA Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYZ0_STEMA
Stenotrophomonas maltophilia strain ZBG7B contig_110, whole genome shotgun sequence {ECO:0000313|EMBL:KIP80204.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
anti sigma-E protein RseA
PLM4_65_coex_sep16_scaffold_1839_4

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2137..3126
DNA (990bp) protein (330aa)
Sigma E regulatory protein, MucB/RseB Tax=mine drainage metagenome RepID=T1D968_9ZZZZ
Sigma E regulatory protein, MucB/RseB {ECO:0000313|EMBL:EQD78740.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
MucB/RseB
PLM4_65_coex_sep16_scaffold_1839_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3149..3394
DNA (246bp) protein (82aa)
Glutaredoxin 2 Tax=Nitrosospira sp. APG3 RepID=M5DGK9_9PROT
Glutaredoxin 2 {ECO:0000313|EMBL:CCU62391.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
glutaredoxin
PLM4_65_coex_sep16_scaffold_1839_6
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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3491..5284
DNA (1794bp) protein (598aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
Elongation factor 4 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BIU5_9GAMM
lepA; GTP-binding protein LepA
PLM4_65_coex_sep16_scaffold_1839_7
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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5376..6371
DNA (996bp) protein (332aa)
peptidase S26A, signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
Signal peptidase I Tax=Nitrosococcus oceani RepID=Q3J8D3_NITOC
PLM4_65_coex_sep16_scaffold_1839_8
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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6402..6776
DNA (375bp) protein (125aa)
Uncharacterized protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BX19_NITHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE13900.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM4_65_coex_sep16_scaffold_1839_9
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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6757..7455
DNA (699bp) protein (233aa)
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000255|HAMAP-Rule:MF_00104}; EC=3.1.26.3 {ECO:0000255|HAMAP-Rule:MF_00104};; Ribonuclease III {ECO:0000255|HAMAP-Rule:MF_00104}; Short=RNase III {ECO:0000255|HAMAP-Rule:MF_00104};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
ribonuclease III Tax=Marinobacterium rhizophilum RepID=UPI0003812BF8
PLM4_65_coex_sep16_scaffold_1839_10
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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7485..8369
DNA (885bp) protein (295aa)
GTPase Era Tax=Thiorhodococcus drewsii AZ1 RepID=G2DZA4_9GAMM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
GTP-binding protein Era
PLM4_65_coex_sep16_scaffold_1839_11
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

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8366..9094
DNA (729bp) protein (243aa)
hypothetical protein Tax=Singularimonas variicoloris RepID=UPI0003745048
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
DNA repair protein RecO
PLM4_65_coex_sep16_scaffold_1839_12
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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9091..9846
DNA (756bp) protein (252aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
pyridoxine 5''''-phosphate synthase Tax=Rheinheimera perlucida RepID=UPI0003640155
pyridoxine 5'-phosphate synthase
PLM4_65_coex_sep16_scaffold_1839_13

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9843..10232
DNA (390bp) protein (130aa)
Putative 4'-phosphopantetheinyl transferase superfamily protein Tax=prokaryotic environmental samples RepID=B3T0S1_9ZZZZ
Marine sediment metagenome DNA, contig: S03H2_L03682 {ECO:0000313|EMBL:GAH44719.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Holo-(acyl-carrier-protein) synthase
PLM4_65_coex_sep16_scaffold_1839_14

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10253..11023
DNA (771bp) protein (257aa)
Polysaccharide biosynthesis protein (Fragment) Tax=mine drainage metagenome RepID=T1AMK1_9ZZZZ
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EQD61856.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_1839_15

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11034..12344
DNA (1311bp) protein (437aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00037153B4
RNA methyltransferase, TrmA family {ECO:0000313|EMBL:EQD65085.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
23S rRNA methyltransferase
PLM4_65_coex_sep16_scaffold_1839_16
Beggiatoa alba, Beggiatoa, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

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12349..13407
DNA (1059bp) protein (353aa)
Beta-hexosaminidase {ECO:0000256|HAMAP-Rule:MF_00364, ECO:0000256|SAAS:SAAS00015774}; EC=3.2.1.52 {ECO:0000256|HAMAP-Rule:MF_00364, ECO:0000256|SAAS:SAAS00114579};; Beta-N-acetylhexosaminidase {ECO:0000256|HAMAP-Rule:MF_00364}; N-acetyl-beta-glucosaminidase {ECO:0000256|HAMAP-Rule:MF_00364}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Beggiatoa.;" source="Beggiatoa alba B18LD.;"
beta N-acetyl-glucosaminidase (EC:3.2.1.52)
Beta-hexosaminidase Tax=Beggiatoa alba B18LD RepID=I3CJQ6_9GAMM
PLM4_65_coex_sep16_scaffold_1839_17
R_Pseudomonas_63_210, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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13404..13862
DNA (459bp) protein (153aa)
PAS/PAC sensor hybrid histidine kinase Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E1Z1_9GAMM
PAS/PAC sensor protein
Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated
Displaying 17 items

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