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PLM4_65_coex_sep16_scaffold_2016

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2016_1
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(3..2486)
DNA (2484bp) protein (828aa)
Aspartate kinase Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJ84_RHOM4
aspartate kinase
Aspartate kinase {ECO:0000313|EMBL:ACY48542.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
PLM4_65_coex_sep16_scaffold_2016_2
unknown

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comp(2601..2828)
DNA (228bp) protein (76aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2016_3
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3058..3879)
DNA (822bp) protein (274aa)
Protein containing DUF62 (Fragment) Tax=mine drainage metagenome RepID=T0ZUX2_9ZZZZ
TPR repeat-containing protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM4_65_coex_sep16_scaffold_2016_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3953..7195
DNA (3243bp) protein (1081aa)
Spermidine synthase {ECO:0000313|EMBL:GAO55814.1}; EC=2.5.1.16 {ECO:0000313|EMBL:GAO55814.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
spermine synthase; K00797 spermidine synthase [EC:2.5.1.16] bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin3_NC10 organism_group=NC10
spermine synthase
PLM4_65_coex_sep16_scaffold_2016_5
Paraglaciecola arctica, Paraglaciecola, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7473..8492)
DNA (1020bp) protein (340aa)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:GAC17789.1}; EC=2.6.1.42 {ECO:0000313|EMBL:GAC17789.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Paraglaciecola.;" source="Paraglaciecola arctica BSs20135.;"
Branched-chain amino acid aminotransferase Tax=Glaciecola arctica BSs20135 RepID=K6XB19_9ALTE
branched-chain amino acid aminotransferase
PLM4_65_coex_sep16_scaffold_2016_6
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8515..9801)
DNA (1287bp) protein (429aa)
Branched-chain alpha-keto acid dehydrogenase subunit E2 Tax=Pseudomonas aeruginosa RepID=U9F141_PSEAI
branched-chain alpha-keto acid dehydrogenase subunit E2
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:ETU82718.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
PLM4_65_coex_sep16_scaffold_2016_7
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9798..10814)
DNA (1017bp) protein (339aa)
bkdA2; 2-oxoisovalerate dehydrogenase subunit betacomponent beta chain) (BCKDH E1-beta) (EC:1.2.4.4)
2-oxoisovalerate dehydrogenase (Beta subunit) Tax=Hydrocarboniphaga effusa AP103 RepID=I8T3W1_9GAMM
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_coex_sep16_scaffold_2016_8
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10817..12052)
DNA (1236bp) protein (412aa)
branched-chain alpha-keto acid dehydrogenase E1 component (EC:1.2.4.4)
2-oxoisovalerate dehydrogenase (Alpha subunit) Tax=Hydrocarboniphaga effusa AP103 RepID=I8I4H9_9GAMM
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_coex_sep16_scaffold_2016_9

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12196..12669
DNA (474bp) protein (158aa)
AsnC family transcriptional regulator (Fragment) Tax=mine drainage metagenome RepID=T1CA67_9ZZZZ
AsnC family transcriptional regulator {ECO:0000313|EMBL:EQD78073.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
transcriptional regulator, AsnC family
PLM4_65_coex_sep16_scaffold_2016_10
unknown

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comp(12764..13753)
DNA (990bp) protein (330aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2016_11
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(14098..14871)
DNA (774bp) protein (258aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036DDB9C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ83163.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_coex_sep16_scaffold_2016_12
unknown

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comp(14888..15445)
DNA (558bp) protein (186aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_2016_trna_1
unknown

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comp(15500..15573)
DNA (74bp)
transferRNA Pro
PLM4_65_coex_sep16_scaffold_2016_13
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15666..17123)
DNA (1458bp) protein (486aa)
membrane protein Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E24887
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
PLM4_65_coex_sep16_scaffold_2016_14
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(17113..17565)
DNA (453bp) protein (151aa)
Uncharacterized protein Tax=Erythrobacter sp. SD-21 RepID=A5P9V2_9SPHN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_coex_sep16_scaffold_2016_15
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17588..17944)
DNA (357bp) protein (119aa)
MerR family transcriptional regulator Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G1S6_9GAMM
transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_coex_sep16_scaffold_2016_16
RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17925..18158)
DNA (234bp) protein (78aa)
Integration host factor subunit alpha Tax=sulfur-oxidizing symbionts RepID=G2DFB5_9GAMM
ihfA; integration host factor subunit alpha
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_52_10_curated
Displaying 17 items

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