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PLM4_65_coex_sep16_scaffold_3130

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_3130_1
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..590
DNA (588bp) protein (196aa)
hypothetical protein Tax=Chelatococcus sp. GW1 RepID=UPI00031919BA
LysR family transcriptional regulator {ECO:0000313|EMBL:ESZ50482.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
LysR family transcriptional regulator
PLM4_65_coex_sep16_scaffold_3130_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

746..1657
DNA (912bp) protein (304aa)
agmatinase Tax=Variovorax paradoxus RepID=UPI000363EEEB
agmatinase
Agmatinase {ECO:0000313|EMBL:ACS21305.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
PLM4_65_coex_sep16_scaffold_3130_3
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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1673..2554
DNA (882bp) protein (294aa)
hypothetical protein Tax=Herbaspirillum sp. JC206 RepID=UPI00037AAB64
Uncharacterized protein {ECO:0000313|EMBL:EEG09657.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans 2002.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_3130_4
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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2618..3931
DNA (1314bp) protein (438aa)
Amino acid/polyamine transporter I Tax=mine drainage metagenome RepID=T1C3X2_9ZZZZ
amino acid permease
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_coex_sep16_scaffold_3130_5
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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3931..5865
DNA (1935bp) protein (645aa)
amidohydrolase Tax=Sphingomonas wittichii RepID=UPI0002F8BF74
Adenine deaminase {ECO:0000313|EMBL:GAO04968.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
amidohydrolase
PLM4_65_coex_sep16_scaffold_3130_6
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5907..7067
DNA (1161bp) protein (387aa)
acyl-CoA dehydrogenase Tax=Herbaspirillum sp. JC206 RepID=UPI0002F32E71
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EYS93938.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
ferredoxin:oxidoreductase FAD/NAD(P)-binding protein
PLM4_65_coex_sep16_scaffold_3130_7
Herbaspirillum sp. TSA66, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7080..8258
DNA (1179bp) protein (393aa)
CoA transferase Tax=Massilia niastensis RepID=UPI0003659DAD
CoA-transferase {ECO:0000313|EMBL:KIF80512.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. TSA66.;"
L-carnitine dehydratase/bile acid-inducible protein F
PLM4_65_coex_sep16_scaffold_3130_8
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(8323..9021)
DNA (699bp) protein (233aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI0003626BA2
class V aminotransferase
Aminotransferase class V {ECO:0000313|EMBL:ACY13897.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM4_65_coex_sep16_scaffold_3130_9

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comp(9274..10248)
DNA (975bp) protein (325aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
pip; proline iminopeptidase Pip (EC:3.4.11.5)
Proline iminopeptidase Tax=Oceanibaculum indicum P24 RepID=K2J1V1_9PROT
PLM4_65_coex_sep16_scaffold_3130_10
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10245..11129)
DNA (885bp) protein (295aa)
Putative permease, DMT superfamily Tax=Caulobacter sp. AP07 RepID=J2PVW3_9CAUL
Putative permease, DMT superfamily {ECO:0000313|EMBL:EJL31907.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
putative permease, DMT superfamily
PLM4_65_coex_sep16_scaffold_3130_11
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11291..12148)
DNA (858bp) protein (286aa)
2-aminomuconate deaminase Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MK38_CORCM
tdcF; 2-aminomuconate deaminase
2-aminomuconate deaminase {ECO:0000313|EMBL:AFE10463.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM4_65_coex_sep16_scaffold_3130_12
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12165..13610)
DNA (1446bp) protein (482aa)
2-aminomuconic semialdehyde dehydrogenase Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MK39_CORCM
amnC; 2-aminomuconic semialdehyde dehydrogenase
2-aminomuconic semialdehyde dehydrogenase {ECO:0000313|EMBL:AFE08039.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM4_65_coex_sep16_scaffold_3130_13
Nocardia brasiliensis, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(13798..14301)
DNA (504bp) protein (168aa)
Transcriptional regulator, AsnC family Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TW30_9CHLR
Putative AsnC family transcriptional regulator {ECO:0000313|EMBL:GAJ86771.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia brasiliensis NBRC 14402.;"
AsnC family transcriptional regulator
PLM4_65_coex_sep16_scaffold_3130_14
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14358..16211
DNA (1854bp) protein (618aa)
Uncharacterized protein Tax=Collimonas fungivorans (strain Ter331) RepID=G0AD30_COLFT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_coex_sep16_scaffold_3130_15
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16589..17443)
DNA (855bp) protein (285aa)
Uncharacterized conserved protein UCP021525 Tax=Thiocapsa marina 5811 RepID=F9U9Q1_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
PLM4_65_coex_sep16_scaffold_3130_16
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17412..18443)
DNA (1032bp) protein (344aa)
Putative uncharacterized protein Tax=Thiocapsa marina 5811 RepID=F9U9Q0_9GAMM
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
Displaying 16 items

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