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PLM4_65_coex_sep16_scaffold_3182

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_3182_1

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1..456
DNA (456bp) protein (152aa)
Peptide chain release factor 3 (Fragment) Tax=mine drainage metagenome RepID=T1DCY1_9ZZZZ
Peptide chain release factor 3 {ECO:0000313|EMBL:EQD79935.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
prfC; peptide chain release factor 3
PLM4_65_coex_sep16_scaffold_3182_2
CG_Elusi_04, Elusimicrobia, Bacteria

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481..1752
DNA (1272bp) protein (424aa)
hypothetical protein Tax=Marinobacterium rhizophilum RepID=UPI00037C4B86
major facilitator transporter
Tax=CG_Elusi_04
PLM4_65_coex_sep16_scaffold_3182_3
Alishewanella agri, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1722..2546)
DNA (825bp) protein (275aa)
Uncharacterized protein Tax=Alishewanella agri BL06 RepID=I8U8A8_9ALTE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIW88203.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewanella agri BL06.;"
PLM4_65_coex_sep16_scaffold_3182_4
Comamonadaceae bacterium B1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2557..2766)
DNA (210bp) protein (70aa)
Acyl-CoA-binding domain-containing protein Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HMF3_RUBGI
acyl-CoA-binding protein
Acyl-CoA-binding protein {ECO:0000313|EMBL:BAO84129.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium B1.;"
PLM4_65_coex_sep16_scaffold_3182_5
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2953..4905)
DNA (1953bp) protein (651aa)
Transglutaminase Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G2K2_9GAMM
Transglutaminase {ECO:0000313|EMBL:EHQ52039.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothiorhodospira sp. PHS-1.;"
transglutaminase domain-containing protein
PLM4_65_coex_sep16_scaffold_3182_6
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4895..5872)
DNA (978bp) protein (326aa)
Uncharacterized protein Tax=Hydrocarboniphaga effusa AP103 RepID=I7Z739_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDH47596.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_3182_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5872..6843)
DNA (972bp) protein (324aa)
Putative ATPase, AAA family Tax=Methylophaga thiooxydans DMS010 RepID=C0N3W1_9GAMM
moxR-like ATPase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_65_coex_sep16_scaffold_3182_8
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6855..9650)
DNA (2796bp) protein (932aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
Valine--tRNA ligase Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GTY0_THISH
valS; valyl-tRNA synthetase
PLM4_65_coex_sep16_scaffold_3182_9
unknown

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comp(9662..9916)
DNA (255bp) protein (85aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_3182_10
endosymbiont of Riftia pachyptila, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9953..10402)
DNA (450bp) protein (150aa)
DNA polymerase III subunit chi {ECO:0000313|EMBL:EGV52042.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EGV52042.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="endosymbiont of Riftia pachyptila (vent Ph05).;"
Lipopolysaccharide export system permease Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DBH6_9GAMM
DNA polymerase III subunit chi
PLM4_65_coex_sep16_scaffold_3182_11
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10693..11085
DNA (393bp) protein (131aa)
Uncharacterised protein {ECO:0000313|EMBL:CRE27651.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
PLM4_65_coex_sep16_scaffold_3182_12
unknown

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11082..11699
DNA (618bp) protein (206aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_3182_13
Spiribacter sp. UAH-SP71, Spiribacter, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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11955..13049
DNA (1095bp) protein (365aa)
Uncharacterized protein Tax=Spiribacter sp. UAH-SP71 RepID=U5T1Y3_9GAMM
permease
Uncharacterized protein {ECO:0000313|EMBL:AGY91554.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Spiribacter.;" source="Spiribacter sp. UAH-SP71.;"
PLM4_65_coex_sep16_scaffold_3182_14
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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13060..14127
DNA (1068bp) protein (356aa)
Permease YjgP/YjgQ family protein Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K6Q3_NITWC
YjgP/YjgQ family permease
Permease YjgP/YjgQ family protein {ECO:0000313|EMBL:ADJ28580.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus watsoni (strain C-113).;"
PLM4_65_coex_sep16_scaffold_3182_15
Methylomonas methanica, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14154..14588)
DNA (435bp) protein (145aa)
RDD domain containing protein Tax=Methylomonas methanica (strain MC09) RepID=G0A0N1_METMM
RDD domain-containing protein
RDD domain containing protein {ECO:0000313|EMBL:AEF98807.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
PLM4_65_coex_sep16_scaffold_3182_16
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14585..15667)
DNA (1083bp) protein (361aa)
Putative uncharacterized protein Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q608D0_METCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAU92169.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
PLM4_65_coex_sep16_scaffold_3182_17
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15678..17627)
DNA (1950bp) protein (650aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00037AFDF9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAU92170.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
PLM4_65_coex_sep16_scaffold_3182_18
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17628..18362)
DNA (735bp) protein (245aa)
ABC transporter permease Tax=Rudaea cellulosilytica RepID=UPI000361B6CE
ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_coex_sep16_scaffold_3182_19
Methylococcus capsulatus, Methylococcus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18364..19329)
DNA (966bp) protein (322aa)
ABC transporter, ATP-binding protein Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=Q608D3_METCA
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AAU92172.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus.;" source="Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath).;"
PLM4_65_coex_sep16_scaffold_3182_20
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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19549..20199
DNA (651bp) protein (217aa)
Cytochrome B561 Tax=Methylosinus trichosporium OB3b RepID=D5QUR3_METTR
Uncharacterized protein {ECO:0000313|EMBL:EIT71226.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
cytochrome B561
Displaying 20 items

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