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PLM4_65_coex_sep16_scaffold_6365

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_6365_1
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..1742
DNA (1740bp) protein (580aa)
2,4-dienoyl-CoA reductase FadH1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2IVC4_PSEUL
2,4-dienoyl-CoA reductase
2,4-dienoyl-CoA reductase {ECO:0000313|EMBL:BAP46259.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
PLM4_65_coex_sep16_scaffold_6365_2

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1739..2500
DNA (762bp) protein (254aa)
Zinc protease (Fragment) Tax=mine drainage metagenome RepID=T1AES0_9ZZZZ
Zinc protease {ECO:0000313|EMBL:EQD40425.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_6365_3
Leisingera methylohalidivorans, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2497..2838
DNA (342bp) protein (114aa)
UPI0003D6AA8B related cluster Tax=unknown RepID=UPI0003D6AA8B
cupin
Cupin {ECO:0000313|EMBL:AHD02121.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera methylohalidivorans DSM 14336.;"
PLM4_65_coex_sep16_scaffold_6365_4
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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3415..3813
DNA (399bp) protein (133aa)
Putative uncharacterized protein Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SFB3_PELPB
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_65_coex_sep16_scaffold_6365_5
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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3861..4715
DNA (855bp) protein (285aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mobilis Nb-231.;"
tryptophan 2,3-dioxygenase (EC:1.13.11.11)
Tryptophan 2,3-dioxygenase Tax=Nitrococcus mobilis Nb-231 RepID=A4BV38_9GAMM
PLM4_65_coex_sep16_scaffold_6365_6
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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4712..5815
DNA (1104bp) protein (368aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase Tax=Pseudomonas putida RepID=R9V5I0_PSEPU
Tax=RBG_16_Gamma2_60_9_curated
PLM4_65_coex_sep16_scaffold_6365_7
Dethiosulfovibrio peptidovorans, Dethiosulfovibrio, Synergistales, Synergistia, Synergistetes, Bacteria

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5819..6820
DNA (1002bp) protein (334aa)
Uncharacterized protein Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=D2Z7Q7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFC91504.1}; Flags: Precursor;; species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Dethiosulfovibrio.;" source="Dethiosulfovibrio peptidovorans DSM 11002.;"
hypothetical protein
PLM4_65_coex_sep16_scaffold_6365_8
Candidatus Contendobacter odensis, Candidatus Contendobacter, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6701..7462)
DNA (762bp) protein (254aa)
hypothetical protein Tax=Thiomonas sp. FB-6 RepID=UPI00036C34B1
High-affinity iron transporter {ECO:0000313|EMBL:CDH45653.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Contendobacter.;" source="Candidatus Contendobacter odensis Run_B_J11.;"
iron permease FTR1 family protein
PLM4_65_coex_sep16_scaffold_6365_9
CG_Gallio_02, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7467..7799)
DNA (333bp) protein (111aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI00036FAE71
hypothetical protein
Tax=CG_Gallio_02
PLM4_65_coex_sep16_scaffold_6365_10

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comp(7912..8613)
DNA (702bp) protein (234aa)
HAD family hydrolase Tax=mine drainage metagenome RepID=T1ATX6_9ZZZZ
HAD family hydrolase {ECO:0000313|EMBL:EQD60887.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
HAD-superfamily hydrolase
PLM4_65_coex_sep16_scaffold_6365_11
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8716..10125
DNA (1410bp) protein (470aa)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI00035E91D6
Membrane protein {ECO:0000313|EMBL:KJV28741.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
membrane protein
PLM4_65_coex_sep16_scaffold_6365_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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10182..10610
DNA (429bp) protein (143aa)
Glyoxalase family protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MQF0_CORCM
glyoxalase family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_coex_sep16_scaffold_6365_13
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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10610..10966
DNA (357bp) protein (119aa)
ArsR family transcriptional regulator Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MQF1_CORCM
ArsR family transcriptional regulator {ECO:0000313|EMBL:AKF83894.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
ArsR family transcriptional regulator
PLM4_65_coex_sep16_scaffold_6365_14

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11382..12284
DNA (903bp) protein (301aa)
Uncharacterized protein {ECO:0000313|EMBL:KKM05195.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_65_coex_sep16_scaffold_6365_15
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12307..14916)
DNA (2610bp) protein (870aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
aconitate hydratase Tax=Dyella ginsengisoli RepID=UPI00034CDC82
aconitate hydratase
PLM4_65_coex_sep16_scaffold_6365_16

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comp(15034..16191)
DNA (1158bp) protein (386aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase {ECO:0000313|EMBL:EFK96460.1}; EC=2.8.1.- {ECO:0000313|EMBL:EFK96460.1};; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (Fragment) Tax=sediment metagenome RepID=D9PJ04_9ZZZZ
PLM4_65_coex_sep16_scaffold_6365_17
unknown

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comp(16251..16388)
DNA (138bp) protein (46aa)

This feature has no annotations

Displaying 17 items

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