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PLM4_90_b1_sep16_scaffold_71

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_71_1
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

comp(108..572)
DNA (465bp) protein (155aa)
Uncharacterized protein bin=GWC2_Planctomycete_KSU_39_26 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=GWC2_Planctomycete_KSU_39_26 organism_group=Planctomycetes
hypothetical protein
Tax=GWF2_WOR_2_43_52_curated
PLM4_90_b1_sep16_scaffold_71_2
RLO_RIF03_38_15, RIF3, Bacteria

Not on your lists

comp(562..1134)
DNA (573bp) protein (191aa)
DNA polymerase subunit beta bin=GWF2_OP3_43_52 species=Methanobacterium formicicum genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
PLM4_90_b1_sep16_scaffold_71_3
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(1197..1451)
DNA (255bp) protein (85aa)
Suspect SCG annotation. See neighboring gene [PLM4_90_b1_sep16_scaffold_71_4].
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
O-sialoglycoprotein endopeptidase
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_71_4
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists


comp(1643..2074)
DNA (432bp) protein (144aa)
gcp; O-sialoglycoprotein endopeptidase Gcp (EC:3.4.24.57)
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_71_5
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(2052..2783)
DNA (732bp) protein (244aa)
Outer membrane lipoprotein carrier protein LolA bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
outer membrane lipoprotein carrier protein LolA
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_71_6
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

3106..3891
DNA (786bp) protein (262aa)
Lipoate protein ligase, putative bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
lipoate protein ligase
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_71_7
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

4036..4386
DNA (351bp) protein (117aa)
Molybdopterin converting factor, subunit 2 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YKB5_THEYD
moaE; molybdopterin converting factor subunit 2
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_71_8
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

4441..5331
DNA (891bp) protein (297aa)
branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase 2 bin=GWB2_Nitrospirae_rel_47_37 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_71_9
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

5336..6004
DNA (669bp) protein (223aa)
Deoxyribose-phosphate aldolase bin=GWB2_Nitrospirae_rel_47_37 species=unknown genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
deoxyribose-phosphate aldolase
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_71_10
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

6034..6252
DNA (219bp) protein (73aa)
Putative uncharacterized protein bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_71_11
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(6270..6989)
DNA (720bp) protein (240aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_71_12
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

7207..7881
DNA (675bp) protein (225aa)
UPF0278 protein THEYE_A0318 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_71_13
Thermococcus gammatolerans, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(7886..9007)
DNA (1122bp) protein (374aa)
ATP-dependent DNA ligase, putative Tax=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) RepID=C5A288_THEGJ
ATP-dependent DNA ligase
ATP-dependent DNA ligase, putative {ECO:0000313|EMBL:ACS34507.1}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3).;"
PLM4_90_b1_sep16_scaffold_71_14
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(9051..9593)
DNA (543bp) protein (181aa)
Putative uncharacterized protein bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_71_15
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(9598..11961)
DNA (2364bp) protein (788aa)
topA; DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase bin=GWB2_Nitrospirae_rel_47_37 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_71_16
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(11958..13043)
DNA (1086bp) protein (362aa)
DNA processing protein DprA bin=GWF2_Nitrospirae_44_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
DNA processing protein DprA
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_71_17
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(13124..14314)
DNA (1191bp) protein (397aa)
argG; argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_71_18
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

14668..15099
DNA (432bp) protein (144aa)
Transcriptional regulator bin=GWC2_CP_Nitrospirae-rel_42_7 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
furR2; FUR family transcriptional regulator
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_71_19
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

15078..15374
DNA (297bp) protein (99aa)
FeoA family protein Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8DZ99_DICTD
FeoA family protein
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_71_20
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

15378..17366
DNA (1989bp) protein (663aa)
Fe2+ transport system protein B Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQP3_SYNAS
Fe2+ transport system protein B
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_71_21
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(17445..18041)
DNA (597bp) protein (199aa)
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
pilX-2; type IV pilus minor pilin PilX
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_71_22
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(18038..19222)
DNA (1185bp) protein (395aa)
Type IV pilus minor pilin PilW bin=GWC2_Proteo_65_14_Ab886 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
pilW-2; type IV pilus minor pilin PilW
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_71_23
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(19219..19692)
DNA (474bp) protein (158aa)
Type IV pilus minor pilin PilV bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
pilV-2; type IV pilus minor pilin PilV
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_71_24
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(19667..20218)
DNA (552bp) protein (184aa)
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=uncultured Nitrospirae bacterium MY3-5B genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_71_25
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(20218..22716)
DNA (2499bp) protein (833aa)
Type IV pilus assembly protein PilY1 bin=GWA2_Deltaproteo_65_63 species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein
Tax=RBG_13_Nitrospirae_43_8_curated
Displaying 25 items

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