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PLM4_90_b1_sep16_scaffold_176

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_176_trna_4
unknown

Not on your lists

comp(7..79)
DNA (73bp)
transferRNA Arg
PLM4_90_b1_sep16_scaffold_176_trna_3
unknown

Not on your lists

comp(185..258)
DNA (74bp)
transferRNA His
PLM4_90_b1_sep16_scaffold_176_trna_2
unknown

Not on your lists

comp(428..501)
DNA (74bp)
transferRNA Arg
PLM4_90_b1_sep16_scaffold_176_trna_1
unknown

Not on your lists

comp(754..837)
DNA (84bp)
transferRNA Leu
PLM4_90_b1_sep16_scaffold_176_1
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(950..2362)
DNA (1413bp) protein (471aa)
tRNA modification GTPase MnmE bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
trmE; tRNA modification GTPase TrmE
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_176_2
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(2409..3899)
DNA (1491bp) protein (497aa)
Membrane protein insertase YidC bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
inner membrane protein OxaA
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_176_3
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

4497..5744
DNA (1248bp) protein (416aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=uncultured Nitrospirae bacterium MY2-3C genus=unknown taxon_order=unknown taxon_class=unknown phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_176_4
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

5805..6809
DNA (1005bp) protein (335aa)
gap; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.-)
Glyceraldehyde-3-phosphate dehydrogenase, type I bin=GWF2_Nitrospirae_44_13 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_176_5
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

6812..8047
DNA (1236bp) protein (412aa)
pgk; phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_176_6
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(8061..8498)
DNA (438bp) protein (146aa)
S-adenosylmethionine decarboxylase (EC:4.1.1.50)
S-adenosylmethionine decarboxylase proenzyme bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_176_7
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(8599..9849)
DNA (1251bp) protein (417aa)
SufB/sufD domain protein Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YHJ4_THEYD
SufB/sufD domain-containing protein
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_176_8
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(9840..10574)
DNA (735bp) protein (245aa)
ABC transporter related protein Tax=Thermodesulfobium narugense DSM 14796 RepID=M1E609_9FIRM
ABC transporter
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_176_9
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(10668..11843)
DNA (1176bp) protein (392aa)
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Desulfotomaculum ruminis genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Fe-S oxidoreductase
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_176_10
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

11928..12218
DNA (291bp) protein (97aa)
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_176_11
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

12219..13064
DNA (846bp) protein (282aa)
transketolase (EC:2.2.1.1)
Transketolase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_176_12
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

13048..14070
DNA (1023bp) protein (341aa)
Transketolase domain protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
transketolase domain-containing protein
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_176_13
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

14067..14729
DNA (663bp) protein (221aa)
Cell division ATP-binding protein FtsE bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
ftsE; cell division ATP-binding protein FtsE
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_176_14
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

14730..15602
DNA (873bp) protein (291aa)
Efflux ABC transporter, permease protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
efflux ABC transporter permease
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_176_15
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

15742..16824
DNA (1083bp) protein (361aa)
Peptidase M23B, putative bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
peptidase M23B
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_176_16
RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated, Nitrospirae, Bacteria

Not on your lists

16806..18155
DNA (1350bp) protein (450aa)
carboxy-terminal processing protease (EC:3.4.21.102)
Carboxy-terminal processing protease bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated
PLM4_90_b1_sep16_scaffold_176_17
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

18243..18593
DNA (351bp) protein (117aa)
Hypothetical conserved protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
PolB-like 3'-5' exonuclease
Tax=CG_Nitrosp_02
Displaying 21 items

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