ggKbase home page

PLM4_90_b1_sep16_scaffold_302

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_302_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1..1569)
DNA (1569bp) protein (523aa)
multi-sensor signal transduction histidine kinase bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
multi-sensor signal transduction histidine kinase
Tax=CSP1_6_Rokubacteria
PLM4_90_b1_sep16_scaffold_302_2
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(1547..3739)
DNA (2193bp) protein (731aa)
Putative Histidine kinase, contains GAF domain bin=GWD2_Nitrospirae-related_57_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
Tax=RBG_13_Actinobacteria_35_12_curated
PLM4_90_b1_sep16_scaffold_302_3
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

Not on your lists

comp(3739..4095)
DNA (357bp) protein (119aa)
Similar to phytoene dehydrogenase (Phytoene desaturase) bin=GWC2_CP_Nitrospirae-rel_42_7 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
all-trans-retinol 13,14-reductase
Tax=GWC2_Nitrospirae_42_7_curated
PLM4_90_b1_sep16_scaffold_302_4
GWC2_Nitrospirae_42_7_curated, Nitrospirae, Bacteria

Not on your lists

comp(4166..4942)
DNA (777bp) protein (259aa)
crtI2; phytoene dehydrogenase (EC:1.14.99.-)
Similar to phytoene dehydrogenase (Phytoene desaturase) bin=GWC2_CP_Nitrospirae-rel_42_7 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=GWC2_Nitrospirae_42_7_curated
PLM4_90_b1_sep16_scaffold_302_5
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(4946..6247)
DNA (1302bp) protein (434aa)
3-oxoacyl-(acyl-carrier-protein) synthase 2 (EC:2.3.1.179)
Beta-ketoacyl synthase, C-terminal domain protein Tax=Paenibacillus RepID=F5LTB4_9BACL
Tax=RBG_13_Actinobacteria_35_12_curated
PLM4_90_b1_sep16_scaffold_302_6
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(6408..7628)
DNA (1221bp) protein (407aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 bin=GWA2_Planctomycete_KSU_39_15 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
putative 3-oxoacyl-ACP synthase II
Tax=RBG_13_Actinobacteria_35_12_curated
PLM4_90_b1_sep16_scaffold_302_7
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(7621..8070)
DNA (450bp) protein (150aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ bin=GWF2_OP3_38_59 species=Clostridium sp. ASF356 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
lpxC_fabZ; (3R)-hydroxymyristoyl-ACP dehydratase
Tax=RBG_13_Actinobacteria_35_12_curated
PLM4_90_b1_sep16_scaffold_302_8
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(8092..8328)
DNA (237bp) protein (79aa)
Acyl carrier protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Hippea maritima genus=Hippea taxon_order=Desulfurellales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
acyl carrier protein
Tax=RBG_13_Actinobacteria_35_12_curated
PLM4_90_b1_sep16_scaffold_302_9
CG_Omnitr_04, Omnitrophica, Bacteria

Not on your lists

comp(8341..9600)
DNA (1260bp) protein (420aa)
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41)
3-oxoacyl-(Acyl-carrier-protein) synthase bin=GWC2_CP_Nitrospirae-rel_42_7 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=CG_Omnitr_04
PLM4_90_b1_sep16_scaffold_302_10
RBG_13_OP3X_46_9_curated, OP3X, Bacteria

Not on your lists

comp(9788..10534)
DNA (747bp) protein (249aa)
fabG2; 3-oxoacyl-[acyl-carrier-protein] reductase FabG (EC:1.1.1.100)
Strongly similar to 3-oxoacyl carrier protein reductase Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q325_9BACT
Tax=RBG_13_OP3X_46_9_curated
PLM4_90_b1_sep16_scaffold_302_11
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(10990..12174)
DNA (1185bp) protein (395aa)
PHP C-terminal domain protein bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
phosphotransferase domain-containing protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_302_12

Not on your lists

comp(12365..12760)
DNA (396bp) protein (132aa)
Sodium proton antiporter Tax=sediment metagenome RepID=D9PK23_9ZZZZ
Sodium proton antiporter {ECO:0000313|EMBL:EFK96094.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="sediment metagenome.;"
DSBA oxidoreductase
PLM4_90_b1_sep16_scaffold_302_13
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12797..13219)
DNA (423bp) protein (141aa)
DsbA oxidoreductase Tax=Desulfococcus multivorans DSM 2059 RepID=S7TGZ7_DESML
protein-disulfide isomerase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b1_sep16_scaffold_302_14
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(13284..14303)
DNA (1020bp) protein (340aa)
Putative uncharacterized protein bin=GWF2_Nitrospirae_44_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_302_15
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists


14377..14673
DNA (297bp) protein (99aa)
30S ribosomal protein S20 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
30S ribosomal protein S20
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_302_16
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(14654..15550)
DNA (897bp) protein (299aa)
DNA polymerase III, delta subunit family bin=GWC2_CP_Nitrospirae-rel_42_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_302_17
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(15547..16026)
DNA (480bp) protein (160aa)
id=4788700 bin=GWC2_CP_Nitrospirae-rel_42_7 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
lipoprotein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_302_18
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists


comp(16150..18732)
DNA (2583bp) protein (861aa)
leuS; leucine--tRNA ligase (EC:6.1.1.4)
Leucine--tRNA ligase bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_302_19
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(19012..20325)
DNA (1314bp) protein (438aa)
Tetratricopeptide repeat domain protein bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
tetratricopeptide repeat domain-containing protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_302_20
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(20766..21422)
DNA (657bp) protein (219aa)
nadD; nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_302_21
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(21527..22783)
DNA (1257bp) protein (419aa)
proA; gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_302_22
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

23080..23949
DNA (870bp) protein (290aa)
Nitrogen fixation protein nifU bin=GWB2_Nitrospirae_rel_47_37 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
nifU; nitrogen fixation iron-sulfur cluster assembly protein NifU
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_302_23
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

23946..25115
DNA (1170bp) protein (390aa)
Cysteine desulfurase bin=GWB2_Nitrospirae_rel_47_37 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
cysteine desulfurase NifS
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_302_24
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(25142..26050)
DNA (909bp) protein (303aa)
cysteine synthase B (EC:2.5.1.47)
Cysteine synthase B (O-acetylserine sulfhydrylase B) (O-acetylserine (Thiol)-lyase B) Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YKN6_THEYD
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_302_25
GWF2_Nitrospirae_44_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(26104..27306)
DNA (1203bp) protein (401aa)
S-adenosylmethionine synthetase (EC:2.5.1.6)
Methionine adenosyltransferase bin=GWF2_Nitrospirae_44_13 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=GWF2_Nitrospirae_44_13_curated
PLM4_90_b1_sep16_scaffold_302_26
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists


comp(27323..27643)
DNA (321bp) protein (107aa)
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_302_27
unknown

Not on your lists

comp(27640..27894)
DNA (255bp) protein (85aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_302_28
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(27843..28166)
DNA (324bp) protein (108aa)
bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase HisIE (EC:3.5.4.19 3.6.1.31)
Phosphoribosyl-AMP cyclohydrolase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_302_29
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

28400..28966
DNA (567bp) protein (189aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=Anoxybacillus flavithermus genus=Anoxybacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_302_30
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

28963..29136
DNA (174bp) protein (58aa)
id=24452302 bin=RBG_19FT_COMBO_Aminicenantes_65_30 tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Tax=CG_Nitrosp_02
Displaying 30 items

View Taxonomy