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PLM4_90_b1_sep16_scaffold_587

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_587_1
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

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2..619
DNA (618bp) protein (206aa)
Putative fimbrial assembly protein PilO-like protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
fimbrial assembly protein PilO-like protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_587_2
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

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616..1128
DNA (513bp) protein (171aa)
Type IV pilus assembly lipoprotein PilP bin=GWC2_CP_Nitrospirae-rel_42_7 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_587_3
CG_Nitrosp_02, Nitrospirae, Bacteria

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1125..3317
DNA (2193bp) protein (731aa)
Type IV pilus secretin PilQ bin=GWF2_Nitrospirae_44_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
type 4 fimbrial biogenesis outer membrane protein PilQ
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_587_4
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

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3480..4676
DNA (1197bp) protein (399aa)
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RBG_13_Nitrospirae_41_22_curated
PLM4_90_b1_sep16_scaffold_587_5
CG_Nitrosp_02, Nitrospirae, Bacteria

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comp(4726..6522)
DNA (1797bp) protein (599aa)
aspS; aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_587_6
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

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comp(6512..7267)
DNA (756bp) protein (252aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-)
Pseudouridine synthase bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_587_7
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

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comp(7307..8383)
DNA (1077bp) protein (359aa)
Translation initiation factor IF-2 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
translation initiation factor IF-2
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_587_8
RBG_13_Nitrospirae_41_22_curated, Nitrospirae, Bacteria

Not on your lists

8622..9623
DNA (1002bp) protein (334aa)
Pseudouridine synthase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
pseudouridylate synthase
Tax=RBG_13_Nitrospirae_41_22_curated
PLM4_90_b1_sep16_scaffold_587_9
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

9834..10685
DNA (852bp) protein (284aa)
Radical SAM domain protein bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
radical SAM protein
Tax=CG_Nitrosp_02
Displaying 9 items

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