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PLM4_90_b1_sep16_scaffold_981

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Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_981_1
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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3..131
DNA (129bp) protein (43aa)
Putative uncharacterized protein Tax=Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217) RepID=A3XJ82_LEEBM bin=16ft_combo_ws3_JS1 species=Leeuwenhoekiella blandensis genus=Leeuwenhoekiella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_981_2
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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357..1673
DNA (1317bp) protein (439aa)
Outer membrane efflux protein bin=GWB2_Nitrospirae_rel_47_37 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
outer membrane efflux protein
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_981_3
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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1680..2798
DNA (1119bp) protein (373aa)
Secretion protein HlyD family protein bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
secretion protein HlyD family protein
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_981_4
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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2835..4361
DNA (1527bp) protein (509aa)
Drug resistance transporter, EmrB/QacA subfamily bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
EmrB/QacA family drug resistance transporter
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_981_5
RBG_13_Nitrospirae_39_12_curated, Nitrospirae, Bacteria

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comp(4641..5162)
DNA (522bp) protein (174aa)
Formate dehydrogenase, beta subunit, putative Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LE88_SYNFM
formate dehydrogenase subunit beta
Tax=RBG_13_Nitrospirae_39_12_curated
PLM4_90_b1_sep16_scaffold_981_6
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5168..7600)
DNA (2433bp) protein (811aa)
Formate dehydrogenase, alpha subunit Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LHR4_SYNFM
formate dehydrogenase subunit alpha
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM4_90_b1_sep16_scaffold_981_7
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7649..8215)
DNA (567bp) protein (189aa)
Molybdopterin oxidoreductase Fe4S4 region Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LHR3_SYNFM
molybdopterin oxidoreductase Fe4S4 region
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM4_90_b1_sep16_scaffold_981_8
RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated, Nitrospirae, Bacteria

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8494..9147
DNA (654bp) protein (218aa)
Probable transaldolase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
transaldolase
Tax=RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated
PLM4_90_b1_sep16_scaffold_981_9
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(9437..9781)
DNA (345bp) protein (115aa)
Lipoprotein, putative bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
lipoprotein
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_981_10
CG_Nitrosp_02, Nitrospirae, Bacteria

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comp(9795..12191)
DNA (2397bp) protein (799aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B bin=GWF2_Nitrospirae_44_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_981_11
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(12256..13374)
DNA (1119bp) protein (373aa)
dnaN; DNA polymerase III subuit beta (EC:2.7.7.7)
DNA polymerase III subunit beta bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_981_12
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(13443..14774)
DNA (1332bp) protein (444aa)
Chromosomal replication initiator protein DnaA bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
dnaA; chromosomal replication initiator protein DnaA
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_981_13
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

comp(15060..15977)
DNA (918bp) protein (306aa)
Peptide chain release factor 2 bin=GWF2_Nitrospirae_44_13 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
peptide chain release factor 2
Tax=CG_Nitrosp_02
PLM4_90_b1_sep16_scaffold_981_14
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

comp(16197..17750)
DNA (1554bp) protein (518aa)
lnt; apolipoprotein N-acyltransferase (EC:2.3.1.-)
Apolipoprotein N-acyltransferase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RBG_13_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_981_trna_1
unknown

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17939..18011
DNA (73bp)
transferRNA Phe
PLM4_90_b1_sep16_scaffold_981_trna_3
unknown

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comp(18112..18184)
DNA (73bp)
transferRNA Lys
PLM4_90_b1_sep16_scaffold_981_trna_2
unknown

Not on your lists

comp(18193..18265)
DNA (73bp)
transferRNA Arg
Displaying 17 items

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