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PLM4_90_b1_sep16_scaffold_24

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_24_1
GWC2_OD1_ACD81_39_22, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

3..818
DNA (816bp) protein (272aa)
sigma-70 region 4 domain protein bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RNA polymerase sigma factor {ECO:0000313|EMBL:KKR12763.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWC2_39_22.;"
hypothetical protein
PLM4_90_b1_sep16_scaffold_24_2
unknown

Not on your lists

855..1121
DNA (267bp) protein (89aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_24_3
RIFOXYB1_FULL_OD1_Wolfebacteria_54_12_curated, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

1176..2465
DNA (1290bp) protein (430aa)
alias=gwe2_scaffold_198_5 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
hypothetical protein
Tax=RIFOXYB1_FULL_OD1_Wolfebacteria_54_12_curated
PLM4_90_b1_sep16_scaffold_24_4
GWC1_OD1_37_10, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

2671..4176
DNA (1506bp) protein (502aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ23072.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWC1_37_10.;"
pla:Plav_0314 hypothetical protein bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
PLM4_90_b1_sep16_scaffold_24_5
RLO_OD1_60_15, Parcubacteria, Bacteria

Not on your lists

4277..4822
DNA (546bp) protein (182aa)
translation elongation factor P (EF-P); K02356 elongation factor P bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
elongation factor P
Tax=RIFCSPLOWO2_12_FULL_OD1_60_15_curated
PLM4_90_b1_sep16_scaffold_24_6
R_Gammaproteobacteria_57_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4901..5782
DNA (882bp) protein (294aa)
Phosphonate ABC transporter, periplasmic phosphonate-binding protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
phosphonate ABC transporter, periplasmic phosphonate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
PLM4_90_b1_sep16_scaffold_24_7
R_OD1_Wolfebacteria_38_11, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

5914..7293
DNA (1380bp) protein (460aa)
Two-component sensor kinase bin=GWC1_OD1_38_17 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
methyl-accepting chemotaxis protein
Tax=RIFCSPLOWO2_01_FULL_OD1_Wolfebacteria_38_11_curated
PLM4_90_b1_sep16_scaffold_24_8
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

7295..9517
DNA (2223bp) protein (741aa)
multi-sensor signal transduction histidine kinase bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
multi-sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
PLM4_90_b1_sep16_scaffold_24_9
R_OD1_46_25, Parcubacteria, Bacteria

Not on your lists

9554..9943
DNA (390bp) protein (130aa)
two-component response regulator bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
chemotaxis protein CheY
Tax=RIFCSPLOWO2_01_FULL_OD1_46_25_curated
PLM4_90_b1_sep16_scaffold_24_10

Not on your lists

10044..10433
DNA (390bp) protein (130aa)
Response regulator receiver protein {ECO:0000313|EMBL:KKT86273.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_45_10.;"
hypothetical protein bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
PAS/PAC sensor hybrid histidine kinase
PLM4_90_b1_sep16_scaffold_24_11
R_OD1_Wolfebacteria_38_11, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

10402..11064
DNA (663bp) protein (221aa)
transmembrane_regions 13..35 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Tax=RIFCSPLOWO2_01_FULL_OD1_Wolfebacteria_38_11_curated
PLM4_90_b1_sep16_scaffold_24_12
GWA2_OD1_45_13, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

11253..12425
DNA (1173bp) protein (391aa)
tRNA-specific 2-thiouridylase mnmA Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LT24_BACS4 bin=ACD81 species=Bacillus cellulosilyticus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
tRNA-specific 2-thiouridylase MnmA {ECO:0000313|EMBL:KKT91698.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Jorgensenbacteria) bacterium GW2011_GWA2_45_13.;"
thiouridylase
PLM4_90_b1_sep16_scaffold_24_13
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12654..13070
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EHG8_GEOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACH38178.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
PLM4_90_b1_sep16_scaffold_24_14
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13232..14122
DNA (891bp) protein (297aa)
Polysaccharide deacetylase Tax=Frankia sp. CN3 RepID=G6H9P4_9ACTO
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ADP83830.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM4_90_b1_sep16_scaffold_24_15
R_RIF_OD1_06_43_17b, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

14128..15222
DNA (1095bp) protein (365aa)
Putative uncharacterized protein Tax=bacterium Ellin514 RepID=B9XKT7_9BACT bin=ACD18 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=ACD18 organism_group=OD1 (Parcubacteria) organism_desc= OD1
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_06_43_17b_curated
PLM4_90_b1_sep16_scaffold_24_16
RBG_16_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

15280..15528
DNA (249bp) protein (83aa)
Putative uncharacterized protein bin=GWF2_OP3_43_52 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
Tax=RBG_16_Nitrospirae_43_8_curated
PLM4_90_b1_sep16_scaffold_24_17
unknown

Not on your lists

comp(15596..15847)
DNA (252bp) protein (84aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_24_18
GWC1_OD1_37_10, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

16017..16328
DNA (312bp) protein (104aa)
10 kDa chaperonin {ECO:0000313|EMBL:KKQ21592.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWC1_37_10.;"
Co-chaperonin GroES (HSP10) bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
chaperonin cpn10
PLM4_90_b1_sep16_scaffold_24_19
RBG_13_OD1_Wolfebacteria_41_7_curated, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

16444..18102
DNA (1659bp) protein (553aa)
groEL; chaperonin GroEL; K04077 chaperonin GroEL bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
chaperonin GroEL
Tax=RBG_13_OD1_Wolfebacteria_41_7_curated
PLM4_90_b1_sep16_scaffold_24_20
unknown

Not on your lists

18172..18390
DNA (219bp) protein (73aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_24_21
R_OD1_Wolfebacteria_42_16, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists


18728..20821
DNA (2094bp) protein (698aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI000369942C
valS; valyl-tRNA synthetase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Wolfebacteria_42_16_curated
PLM4_90_b1_sep16_scaffold_24_22
unknown

Not on your lists

21075..21566
DNA (492bp) protein (164aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_24_23
unknown

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21770..22174
DNA (405bp) protein (135aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_24_24
GWA1_OP11_40_24_partial, Curtissbacteria, Microgenomates, Bacteria

Not on your lists

22325..23128
DNA (804bp) protein (268aa)
triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase {ECO:0000313|EMBL:KKR55723.1}; species="Bacteria; Microgenomates.;" source="Microgenomates (Curtissbacteria) bacterium GW2011_GWA1_40_24.;"
PLM4_90_b1_sep16_scaffold_24_25
R_OD1_Jorgensenbacteria_45_20, Jorgensenbacteria, Parcubacteria, Bacteria

Not on your lists

23094..23693
DNA (600bp) protein (200aa)
hypothetical protein Tax=Bacillus sp. 123MFChir2 RepID=UPI00037DC7AA
metal dependent phosphohydrolase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Jorgensenbacteria_45_20_curated
PLM4_90_b1_sep16_scaffold_24_26
R_OP11_Roizmanbacteria_39_12b, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

23713..24240
DNA (528bp) protein (176aa)
Phosphatase Tax=uncultured bacterium RepID=K1XUY4_9BACT
PAP2 superfamily protein
Tax=RIFCSPHIGHO2_01_FULL_OP11_Roizmanbacteria_39_12b_curated
PLM4_90_b1_sep16_scaffold_24_27
unknown

Not on your lists

comp(24275..24565)
DNA (291bp) protein (97aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_24_28
R_OD1_53_13, Parcubacteria, Bacteria

Not on your lists

24810..25034
DNA (225bp) protein (75aa)
hypothetical protein, partial Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000368F804
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_53_13_curated
PLM4_90_b1_sep16_scaffold_24_29
GWE2_OD1_ACD81_44_13, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(25147..25920)
DNA (774bp) protein (258aa)
ABC-3 protein {ECO:0000313|EMBL:KKT42744.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWE2_44_13.;"
ABC-3 protein bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
ABC transporter permease
PLM4_90_b1_sep16_scaffold_24_30
RIFOXYD12_FULL_OD1_Wolfebacteria_48_21_curated, Wolfebacteria, Parcubacteria, Bacteria

Not on your lists

comp(25926..26633)
DNA (708bp) protein (236aa)
ABC transporter related protein Tax=Legionella drancourtii LLAP12 RepID=C6N1X8_9GAMM bin=ACD81 species=Legionella drancourtii genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
ABC transporter ATP-binding protein
Tax=RIFOXYD12_FULL_OD1_Wolfebacteria_48_21_curated
Displaying items 1-30 of 39 in total

View Taxonomy