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PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 251-300 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_13425
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
6 3173 bp 46.14 11.01 77.81
PLM4_90_b1_sep16_scaffold_14611
Class: Deltaproteobacteria (100%)
5 3962 bp 48.89 12.08 77.84
PLM4_90_b1_sep16_scaffold_6647
Domain: Bacteria (66.67%)
3 3742 bp 53.55 14.19 77.85
PLM4_90_b1_sep16_scaffold_9602
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
6 3951 bp 48.14 10.36 77.90
PLM4_90_b1_sep16_scaffold_34474
Species: BJP_IG2069_Desfulfarculales_53_13 (50%)
4 3738 bp 44.70 14.00 77.93
PLM4_90_b1_sep16_scaffold_11134
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
8 6244 bp 47.92 10.76 77.93
PLM4_90_b1_sep16_scaffold_8641
Species: RBG_13_Deltaproteobacteria_52_11b_curated (50%)
4 3284 bp 51.64 9.18 78.01
PLM4_90_b1_sep16_scaffold_2484
Class: Deltaproteobacteria (90%)
10 9286 bp 48.73 16.25 78.02
PLM4_90_b1_sep16_scaffold_3528
Class: Deltaproteobacteria (71.43%)
7 7735 bp 48.12 16.06 78.03
PLM4_90_b1_sep16_scaffold_8252
Species: RBG_13_Deltaproteobacteria_43_22_curated (60%)
5 3359 bp 49.75 14.56 78.06
PLM4_90_b1_sep16_scaffold_4456
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 4551 bp 47.53 13.05 78.11
PLM4_90_b1_sep16_scaffold_15719
Class: Deltaproteobacteria (50%)
6 4372 bp 45.79 6.86 78.16
PLM4_90_b1_sep16_scaffold_13485
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
2 2625 bp 49.98 13.94 78.17
PLM4_90_b1_sep16_scaffold_17808
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
3 3337 bp 49.66 7.82 78.21
PLM4_90_b1_sep16_scaffold_29807
Species: RBG_13_Deltaproteobacteria_53_10_curated (100%)
1 2702 bp 53.48 13.32 78.28
PLM4_90_b1_sep16_scaffold_33032
Class: Deltaproteobacteria (50%)
4 2832 bp 48.45 12.87 78.28
PLM4_90_b1_sep16_scaffold_6616
Domain: Bacteria (50%)
4 3750 bp 49.23 8.68 78.32
PLM4_90_b1_sep16_scaffold_9374
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3148 bp 46.79 10.01 78.34
PLM4_90_b1_sep16_scaffold_24994
Class: Deltaproteobacteria (66.67%)
6 2759 bp 44.51 12.99 78.40
PLM4_90_b1_sep16_scaffold_3361
Species: RBG_16_Deltaproteobacteria_47_11_curated (87.5%)
8 5176 bp 47.86 9.42 78.42
PLM4_90_b1_sep16_scaffold_6097
Domain: Bacteria (50%)
8 3905 bp 45.69 10.18 78.44
PLM4_90_b1_sep16_scaffold_17930
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 2757 bp 47.19 15.83 78.45
PLM4_90_b1_sep16_scaffold_23703
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
3 3157 bp 49.38 7.74 78.59
PLM4_90_b1_sep16_scaffold_3805
Species: Desulfotomaculum gibsoniae (50%)
4 4889 bp 48.58 16.60 78.61
PLM4_90_b1_sep16_scaffold_12404
Species: CSP1_5_NC10 (66.67%)
3 2740 bp 47.96 7.77 78.61
PLM4_90_b1_sep16_scaffold_5540
Species: RBG_16_Deltaproteobacteria_48_10_curated (77.78%)
9 7547 bp 46.65 14.29 78.63
PLM4_90_b1_sep16_scaffold_2312
Class: Deltaproteobacteria (70%)
10 9611 bp 52.12 14.95 78.69
PLM4_90_b1_sep16_scaffold_1980
Domain: Bacteria (80%)
5 6664 bp 42.03 10.76 78.74
PLM4_90_b1_sep16_scaffold_14286
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
3 3219 bp 46.07 8.90 78.84
PLM4_90_b1_sep16_scaffold_21970
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3584 bp 48.72 8.71 78.85
PLM4_90_b1_sep16_scaffold_7931
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3424 bp 48.04 11.52 78.86
PLM4_90_b1_sep16_scaffold_3503
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
3 5075 bp 48.61 16.11 78.86
PLM4_90_b1_sep16_scaffold_35050
Species: RBG_16_Deltaproteobacteria_50_11_curated (66.67%)
3 2678 bp 50.93 10.47 78.86
PLM4_90_b1_sep16_scaffold_24096
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
4 2649 bp 50.77 12.51 78.94
PLM4_90_b1_sep16_scaffold_28354
Class: Deltaproteobacteria (71.43%)
7 2789 bp 40.37 12.64 78.95
PLM4_90_b1_sep16_scaffold_6446
Phylum: Proteobacteria (50%)
8 7377 bp 43.27 4.88 78.98
PLM4_90_b1_sep16_scaffold_8939
Class: Deltaproteobacteria (57.14%)
7 5508 bp 49.35 13.04 79.03
PLM4_90_b1_sep16_scaffold_15791
Species: RBG_16_Deltaproteobacteria_47_11_curated (85.71%)
7 3938 bp 44.49 15.81 79.05
PLM4_90_b1_sep16_scaffold_14419
Class: Deltaproteobacteria (60%)
5 2535 bp 45.36 6.45 79.05
PLM4_90_b1_sep16_scaffold_4684
Class: Deltaproteobacteria (57.14%)
7 4441 bp 49.22 18.71 79.06
PLM4_90_b1_sep16_scaffold_5032
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (80%)
5 6093 bp 48.43 12.85 79.07
PLM4_90_b1_sep16_scaffold_13055
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
4 3769 bp 51.31 14.49 79.12
PLM4_90_b1_sep16_scaffold_905
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (56.25%)
16 9111 bp 49.02 19.34 79.12
PLM4_90_b1_sep16_scaffold_2827
Class: Deltaproteobacteria (66.67%)
9 7870 bp 50.10 13.09 79.25
PLM4_90_b1_sep16_scaffold_7190
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3603 bp 44.77 12.32 79.35
PLM4_90_b1_sep16_scaffold_11522
Class: Deltaproteobacteria (66.67%)
6 4652 bp 47.87 13.28 79.45
PLM4_90_b1_sep16_scaffold_2459
Class: Deltaproteobacteria (50%)
4 5998 bp 46.30 7.58 79.48
PLM4_90_b1_sep16_scaffold_1419
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
12 9022 bp 44.89 17.84 79.49
PLM4_90_b1_sep16_scaffold_944
Class: Deltaproteobacteria (100%)
10 8988 bp 47.72 15.02 79.51
PLM4_90_b1_sep16_scaffold_42916
Species: RBG_13_Deltaproteobacteria_52_11b_curated (80%)
5 3180 bp 48.30 8.63 79.62
Displaying items 251-300 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.