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PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 301-350 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_21402
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 3806 bp 44.64 7.21 79.69
PLM4_90_b1_sep16_scaffold_6629
Species: bacterium UASB270 (66.67%)
3 3745 bp 50.33 11.26 79.71
PLM4_90_b1_sep16_scaffold_4921
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
6 4677 bp 45.29 11.42 79.73
PLM4_90_b1_sep16_scaffold_30178
Species: RBG_13_Deltaproteobacteria_47_9_curated (100%)
3 2795 bp 48.30 7.14 79.75
PLM4_90_b1_sep16_scaffold_7882
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
12 9622 bp 48.74 14.44 79.79
PLM4_90_b1_sep16_scaffold_12320
Species: RBG_16_Deltaproteobacteria_47_11_curated (85.71%)
7 5803 bp 47.20 18.02 79.87
PLM4_90_b1_sep16_scaffold_2545
Domain: Bacteria (75%)
8 5904 bp 46.70 15.85 79.93
PLM4_90_b1_sep16_scaffold_5745
Class: Deltaproteobacteria (100%)
3 4023 bp 48.22 13.68 79.94
PLM4_90_b1_sep16_scaffold_4283
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 5739 bp 45.60 12.73 80.14
PLM4_90_b1_sep16_scaffold_4999
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
7 6270 bp 47.80 18.40 80.14
PLM4_90_b1_sep16_scaffold_7528
Species: RBG_13_Chloroflexi_53_26_curated (50%)
2 3521 bp 50.64 11.29 80.18
PLM4_90_b1_sep16_scaffold_9863
Species: RBG_16_Aminicenantes_63_16_curated (50%)
4 4255 bp 50.46 17.20 80.24
PLM4_90_b1_sep16_scaffold_10136
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
8 6302 bp 48.57 14.45 80.26
PLM4_90_b1_sep16_scaffold_4654
Class: Deltaproteobacteria (55.56%)
9 7875 bp 50.73 14.15 80.30
PLM4_90_b1_sep16_scaffold_9671
Class: Deltaproteobacteria (60%)
5 3104 bp 45.36 18.70 80.32
PLM4_90_b1_sep16_scaffold_11860
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
3 3115 bp 49.50 9.87 80.32
PLM4_90_b1_sep16_scaffold_5762
Species: RBG_16_Deltaproteobacteria_48_10_curated (57.14%)
7 10153 bp 51.12 17.54 80.34
PLM4_90_b1_sep16_scaffold_9502
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
3 3129 bp 45.22 15.29 80.35
PLM4_90_b1_sep16_scaffold_3682
Class: Deltaproteobacteria (83.33%)
6 4967 bp 46.27 12.71 80.39
PLM4_90_b1_sep16_scaffold_13187
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 2657 bp 47.91 9.65 80.39
PLM4_90_b1_sep16_scaffold_5028
Domain: Bacteria (80%)
5 4280 bp 48.32 17.38 80.40
PLM4_90_b1_sep16_scaffold_9791
Class: Deltaproteobacteria (83.33%)
6 5413 bp 48.37 9.26 80.53
PLM4_90_b1_sep16_scaffold_2299
Species: RBG_16_Deltaproteobacteria_47_11_curated (90%)
10 8850 bp 48.18 14.20 80.54
PLM4_90_b1_sep16_scaffold_3898
Class: Alphaproteobacteria (50%)
4 4841 bp 50.86 6.72 80.56
PLM4_90_b1_sep16_scaffold_22477
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
6 3144 bp 48.73 11.21 80.60
PLM4_90_b1_sep16_scaffold_17054
Phylum: Proteobacteria (71.43%)
7 3970 bp 47.76 15.26 80.63
PLM4_90_b1_sep16_scaffold_35877
Class: Deltaproteobacteria (71.43%)
7 3378 bp 48.67 10.12 80.64
PLM4_90_b1_sep16_scaffold_13604
Class: Deltaproteobacteria (60%)
5 3203 bp 45.18 8.20 80.64
PLM4_90_b1_sep16_scaffold_67993
Class: Deltaproteobacteria (100%)
3 2842 bp 46.73 13.46 80.65
PLM4_90_b1_sep16_scaffold_19005
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 3038 bp 45.39 16.24 80.68
PLM4_90_b1_sep16_scaffold_14739
Class: Deltaproteobacteria (80%)
5 4224 bp 51.75 14.31 80.68
PLM4_90_b1_sep16_scaffold_431
Class: Deltaproteobacteria (84.62%)
13 13408 bp 50.16 14.55 80.68
PLM4_90_b1_sep16_scaffold_11064
Domain: Bacteria (66.67%)
3 3279 bp 52.12 11.12 80.70
PLM4_90_b1_sep16_scaffold_3070
Class: Deltaproteobacteria (100%)
7 6313 bp 49.17 12.47 80.74
PLM4_90_b1_sep16_scaffold_21384
Class: Deltaproteobacteria (80%)
5 3651 bp 53.25 9.94 80.77
PLM4_90_b1_sep16_scaffold_2278
Phylum: Chloroflexi (66.67%)
6 7220 bp 49.72 14.09 80.82
PLM4_90_b1_sep16_scaffold_12613
Class: Deltaproteobacteria (50%)
4 3092 bp 46.18 8.25 80.82
PLM4_90_b1_sep16_scaffold_10797
Species: RBG_13_Deltaproteobacteria_47_9_curated (50%)
4 2938 bp 49.32 10.06 80.87
PLM4_90_b1_sep16_scaffold_10610
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3550 bp 47.61 12.00 80.87
PLM4_90_b1_sep16_scaffold_3174
Class: Deltaproteobacteria (83.33%)
12 13055 bp 49.48 14.57 80.89
PLM4_90_b1_sep16_scaffold_19225
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3111 bp 48.96 12.63 80.91
PLM4_90_b1_sep16_scaffold_34082
Class: Deltaproteobacteria (50%)
4 2779 bp 42.68 17.22 80.96
PLM4_90_b1_sep16_scaffold_6444
Domain: Bacteria (85.71%)
7 3804 bp 45.03 12.54 80.99
PLM4_90_b1_sep16_scaffold_6333
Class: Deltaproteobacteria (75%)
4 3832 bp 43.19 11.04 81.03
PLM4_90_b1_sep16_scaffold_30947
Class: Deltaproteobacteria (50%)
6 2690 bp 47.55 14.22 81.08
PLM4_90_b1_sep16_scaffold_34812 4 2638 bp 54.36 6.65 81.20
PLM4_90_b1_sep16_scaffold_8065
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 3397 bp 48.22 8.30 81.25
PLM4_90_b1_sep16_scaffold_16009
Species: RBG_16_Deltaproteobacteria_47_11_curated (57.14%)
7 4322 bp 47.83 14.44 81.28
PLM4_90_b1_sep16_scaffold_11449
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 2852 bp 47.05 17.36 81.31
PLM4_90_b1_sep16_scaffold_8900
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
8 5244 bp 47.44 15.99 81.41
Displaying items 301-350 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.