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PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 351-400 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_40027
Class: Deltaproteobacteria (100%)
5 2515 bp 49.82 11.21 81.47
PLM4_90_b1_sep16_scaffold_3647
Class: Deltaproteobacteria (66.67%)
3 4985 bp 51.13 18.90 81.48
PLM4_90_b1_sep16_scaffold_3307
Class: Deltaproteobacteria (75%)
8 8254 bp 49.65 13.01 81.56
PLM4_90_b1_sep16_scaffold_4415
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (83.33%)
6 4570 bp 48.16 11.62 81.60
PLM4_90_b1_sep16_scaffold_2261
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
12 9720 bp 48.70 8.97 81.67
PLM4_90_b1_sep16_scaffold_8464
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 4382 bp 46.51 14.58 81.68
PLM4_90_b1_sep16_scaffold_3000
Class: Deltaproteobacteria (58.33%)
12 5818 bp 47.51 17.20 81.68
PLM4_90_b1_sep16_scaffold_12015
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
6 5153 bp 48.55 18.02 81.68
PLM4_90_b1_sep16_scaffold_12372
Species: RBG_13_Deltaproteobacteria_53_10_curated (50%)
6 5649 bp 52.98 6.77 81.73
PLM4_90_b1_sep16_scaffold_4448
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 4555 bp 46.41 19.46 81.73
PLM4_90_b1_sep16_scaffold_7990
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 3412 bp 47.39 17.54 81.77
PLM4_90_b1_sep16_scaffold_8799
Species: RBG_16_Deltaproteobacteria_49_23_curated (100%)
2 3254 bp 52.83 8.76 81.78
PLM4_90_b1_sep16_scaffold_29486
Phylum: Proteobacteria (57.14%)
7 3118 bp 44.45 9.19 81.78
PLM4_90_b1_sep16_scaffold_2413
Class: Deltaproteobacteria (75%)
8 7772 bp 51.17 11.12 81.79
PLM4_90_b1_sep16_scaffold_10486
Class: Deltaproteobacteria (66.67%)
3 2983 bp 49.92 29.27 81.86
PLM4_90_b1_sep16_scaffold_8946
Class: Deltaproteobacteria (50%)
6 4367 bp 46.19 9.24 81.96
PLM4_90_b1_sep16_scaffold_4326
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 4610 bp 50.67 6.67 82.00
PLM4_90_b1_sep16_scaffold_22516
Class: Deltaproteobacteria (71.43%)
7 4525 bp 51.25 6.70 82.01
PLM4_90_b1_sep16_scaffold_11840
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
8 5506 bp 48.44 15.86 82.11
PLM4_90_b1_sep16_scaffold_3958
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
4 5227 bp 49.42 9.67 82.13
PLM4_90_b1_sep16_scaffold_16103
Domain: Bacteria (63.64%)
11 7813 bp 49.44 8.14 82.17
PLM4_90_b1_sep16_scaffold_2170
Class: Deltaproteobacteria (80%)
10 12457 bp 50.24 15.81 82.19
PLM4_90_b1_sep16_scaffold_7957
Class: Deltaproteobacteria (100%)
3 3419 bp 46.97 7.68 82.22
PLM4_90_b1_sep16_scaffold_20199
Phylum: Firmicutes (50%)
4 3386 bp 46.37 4.74 82.22
PLM4_90_b1_sep16_scaffold_6827
Class: Deltaproteobacteria (66.67%)
6 5564 bp 44.97 13.53 82.23
PLM4_90_b1_sep16_scaffold_4160
Class: Deltaproteobacteria (60%)
10 9026 bp 47.56 16.72 82.26
PLM4_90_b1_sep16_scaffold_13269
Class: Deltaproteobacteria (50%)
4 2647 bp 46.24 8.27 82.40
PLM4_90_b1_sep16_scaffold_11756
Species: RBG_16_Acidobacteria_64_8_curated (50%)
4 2814 bp 49.79 15.41 82.52
PLM4_90_b1_sep16_scaffold_15464
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3755 bp 47.62 13.82 82.61
PLM4_90_b1_sep16_scaffold_9561
Domain: Bacteria (66.67%)
3 3119 bp 50.40 9.76 82.62
PLM4_90_b1_sep16_scaffold_47784
Species: RBG_16_Deltaproteobacteria_48_10_curated (88.89%)
9 5368 bp 48.23 10.00 82.66
PLM4_90_b1_sep16_scaffold_9024
Species: RBG_13_Deltaproteobacteria_47_9_curated (66.67%)
3 3212 bp 50.53 11.58 82.66
PLM4_90_b1_sep16_scaffold_6954
Class: Deltaproteobacteria (100%)
5 5108 bp 48.83 14.54 82.69
PLM4_90_b1_sep16_scaffold_1761
Class: Deltaproteobacteria (62.5%)
8 8464 bp 46.48 15.15 82.76
PLM4_90_b1_sep16_scaffold_11901
Species: GWA2_Deltaproteobacteria_65_63_curated (100%)
1 2797 bp 42.80 9.28 82.80
PLM4_90_b1_sep16_scaffold_7640
Class: Deltaproteobacteria (80%)
10 9557 bp 48.36 12.21 82.81
PLM4_90_b1_sep16_scaffold_5480
Species: RBG_16_Deltaproteobacteria_47_11_curated (62.5%)
8 7212 bp 48.70 16.43 82.82
PLM4_90_b1_sep16_scaffold_6039
Class: Deltaproteobacteria (50%)
6 3925 bp 44.48 10.01 82.85
PLM4_90_b1_sep16_scaffold_286
Class: Deltaproteobacteria (66.67%)
15 13554 bp 46.89 11.14 82.87
PLM4_90_b1_sep16_scaffold_12519
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
2 2729 bp 47.56 14.35 82.89
PLM4_90_b1_sep16_scaffold_18739
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 2764 bp 46.74 10.91 82.92
PLM4_90_b1_sep16_scaffold_3573
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
8 5026 bp 48.27 12.80 82.97
PLM4_90_b1_sep16_scaffold_11428
Class: Deltaproteobacteria (66.67%)
6 5194 bp 48.56 21.92 83.00
PLM4_90_b1_sep16_scaffold_1709
Class: Deltaproteobacteria (100%)
10 9123 bp 52.65 12.68 83.06
PLM4_90_b1_sep16_scaffold_9822
Domain: Bacteria (50%)
6 3077 bp 44.46 7.41 83.07
PLM4_90_b1_sep16_scaffold_66107
Species: marine sediment metagenome (66.67%)
3 2617 bp 50.06 6.02 83.11
PLM4_90_b1_sep16_scaffold_18228
Class: Deltaproteobacteria (71.43%)
7 3669 bp 46.42 9.20 83.21
PLM4_90_b1_sep16_scaffold_873
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (54.55%)
11 11288 bp 42.90 10.19 83.24
PLM4_90_b1_sep16_scaffold_7314
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
8 6162 bp 46.72 12.76 83.25
PLM4_90_b1_sep16_scaffold_6016
Class: Deltaproteobacteria (100%)
6 3931 bp 50.09 13.20 83.26
Displaying items 351-400 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.