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PLM4_90_b1_sep16_scaffold_5229

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_5229_1

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comp(2..529)
-----------------
DNA (528bp)
protein (176aa)
Chloride channel Tax=uncultured archaeon GZfos23H7 RepID=Q5XQA5_9ARCH
Chloride channel {ECO:0000313|EMBL:AAU43661.1}; species="Archaea; environmental samples.;" source="uncultured archaeon GZfos23H7.;"
PLM4_90_b1_sep16_scaffold_5229_2
unknown

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comp(496..882)
-----------------
DNA (387bp)
protein (129aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_5229_3
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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1038..2153
-----------------
DNA (1116bp)
protein (372aa)
ABC-type transport system, involved in lipoprotein release, permease component Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KTH1_METHD
ABC-type transport system, involved in lipoprotein release, permease component
ABC transporter permease {ECO:0000313|EMBL:KKG60545.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei (Methanosarcina frisia).;"
PLM4_90_b1_sep16_scaffold_5229_4
Methanomethylovorans hollandica, Methanomethylovorans, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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2153..2488
-----------------
DNA (336bp)
protein (112aa)
ABC-type antimicrobial peptide transport system, ATPase component Tax=Fervidobacterium pennivorans (strain DSM 9078 / Ven5) RepID=H9UA42_FERPD
antimicrobial peptide ABC transporter ATPase
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:AGB49570.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanomethylovorans.;" source="Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 /; DMS1).;"
PLM4_90_b1_sep16_scaffold_5229_5
unknown

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2548..2673
-----------------
DNA (126bp)
protein (42aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_5229_6
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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3065..3481
-----------------
DNA (417bp)
protein (139aa)
DNA polymerase IV Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HHR3_METFS
nucleotidyltransferase/DNA polymerase involved in DNA repair
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_5229_7
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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3610..4080
-----------------
DNA (471bp)
protein (157aa)
DNA polymerase IV 2 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BZE8_METCG
dph2; DNA polymerase IV 2
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_5229_8
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(4096..4356)
-----------------
DNA (261bp)
protein (87aa)
id=16951134 bin=RBG_16_Aminicenantes_66_30 tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_5229_9
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(4429..4713)
-----------------
DNA (285bp)
protein (95aa)
Uncharacterized protein Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T6R4_9EURY
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_5229_10
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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4871..6433
-----------------
DNA (1563bp)
protein (521aa)
Fe-S oxidoreductases family 2 Tax=uncultured archaeon GZfos23H7 RepID=Q5XQB5_9ARCH
radical SAM protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_5229_11
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(6485..6742)
-----------------
DNA (258bp)
protein (86aa)
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_5229_12
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(6873..7436)
-----------------
DNA (564bp)
protein (188aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein bin=GWB2_Chloroflexi_49_20 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
Displaying 12 items

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