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PLM4_90_b1_sep16_scaffold_191

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_191_1
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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2..346
-----------------
DNA (345bp)
protein (115aa)
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_2
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(343..939)
-----------------
DNA (597bp)
protein (199aa)
tmk; thymidylate kinase (EC:2.7.4.9)
Probable thymidylate kinase Tax=Pyrococcus furiosus RepID=KTHY_PYRFU
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_3
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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1112..2362
-----------------
DNA (1251bp)
protein (417aa)
Arabinose efflux permease family protein (Fragment) Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U4N5_9ARCH
arabinose efflux permease family protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_4
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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2443..3723
-----------------
DNA (1281bp)
protein (427aa)
hypothetical protein Tax=candidate division YNPFFA RepID=UPI00037BD128
putative metal dependent phosphohydrolase
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_5
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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3736..4149
-----------------
DNA (414bp)
protein (138aa)
UPF0107 protein OCC_10319 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZRB4_THELI
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_6
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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4157..5329
-----------------
DNA (1173bp)
protein (391aa)
hypothetical protein Tax=Methanothermococcus thermolithotrophicus RepID=UPI00037F0D9D
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_trna_1
unknown

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5377..5451
-----------------
DNA (75bp)
transferRNA Glu
PLM4_90_b1_sep16_scaffold_191_7
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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5576..6430
-----------------
DNA (855bp)
protein (285aa)
Transporter Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=Q8PS83_METMA
Integral membrane protein {ECO:0000313|EMBL:AKB79209.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina horonobensis HB-1 = JCM 15518.;"
integral membrane protein
PLM4_90_b1_sep16_scaffold_191_8
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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6576..6824
-----------------
DNA (249bp)
protein (83aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI0003655B3B
Zn-dependent carboxypeptidase
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_9
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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6815..8086
-----------------
DNA (1272bp)
protein (424aa)
Carboxypeptidase Taq (EC:3.4.17.19)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI0003655B3B
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_10
unknown

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comp(8083..8268)
-----------------
DNA (186bp)
protein (62aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_191_11
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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8599..10053
-----------------
DNA (1455bp)
protein (485aa)
fae; formaldehyde-activating protein (EC:4.3.-.-)
Bifunctional enzyme Fae/Hps Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8IA85_METCZ
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_12
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(10083..11282)
-----------------
DNA (1200bp)
protein (400aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00035C411D
major facilitator superfamily transporter
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_13
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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11423..11872
-----------------
DNA (450bp)
protein (150aa)
30S ribosomal protein S6e Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RI14_ARCPA
30S ribosomal protein S6e
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_14
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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11945..13189
-----------------
DNA (1245bp)
protein (415aa)
Translation initiation factor 2 subunit gamma Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BF40_METIK
translation initiation factor 2 subunit gamma
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_15
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

13191..13616
-----------------
DNA (426bp)
protein (142aa)
UPI0003D19FA5 related cluster Tax=unknown RepID=UPI0003D19FA5
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_16
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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13638..14216
-----------------
DNA (579bp)
protein (193aa)
rpoE'; DNA-directed RNA polymerase, subunit E` (EC:2.7.7.6)
DNA-directed RNA polymerase subunit E Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T895_9ARCH
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_17
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

14213..14398
-----------------
DNA (186bp)
protein (62aa)
DNA-directed RNA polymerase subunit E'' (EC:2.7.7.6)
Transcription elongation factor Spt4 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T2F6_9ARCH
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_18
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

14490..14933
-----------------
DNA (444bp)
protein (148aa)
UPF0218 protein PYRAB16870 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Y1687_PYRAB
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_19

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14976..15290
-----------------
DNA (315bp)
protein (105aa)
30S ribosomal protein S24e Tax=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) RepID=RS24_METMA
Marine sediment metagenome DNA, contig: S06H3_S06103 {ECO:0000313|EMBL:GAI29442.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rps24e; 30S ribosomal protein S24
PLM4_90_b1_sep16_scaffold_191_20
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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15299..15619
-----------------
DNA (321bp)
protein (107aa)
30S ribosomal protein S27ae Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7T8X4_9ARCH
30S ribosomal protein S27ae
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_21
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

15657..16097
-----------------
DNA (441bp)
protein (147aa)
Putative uncharacterized protein Tax=Ignisphaera aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1) RepID=E0SRE0_IGNAA
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_22
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(16116..16520)
-----------------
DNA (405bp)
protein (135aa)
30S ribosomal protein S19P Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AFU9_PYRYC
30S ribosomal protein S19P
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_23

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comp(16551..17327)
-----------------
DNA (777bp)
protein (259aa)
50S ribosomal protein L2 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U4P9_9ARCH
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; species="Archaea; Crenarchaeota; miscellaneous Crenarchaeota group; environmental samples.;" source="uncultured miscellaneous Crenarchaeota group.;"
rpl2p; 50S ribosomal protein L2
PLM4_90_b1_sep16_scaffold_191_24
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


comp(17349..17609)
-----------------
DNA (261bp)
protein (87aa)
50S ribosomal protein L23P Tax=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) RepID=RL23_PYRHO
rplW; 50S ribosomal protein L23
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_25
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(17609..18400)
-----------------
DNA (792bp)
protein (264aa)
50S ribosomal protein L4 Tax=Methanobacterium sp. MB1 RepID=U6ECB7_9EURY
50S ribosomal protein L1e
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_26
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


comp(18414..19427)
-----------------
DNA (1014bp)
protein (338aa)
50S ribosomal protein L3 Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TAY3_9ARCH
50S ribosomal protein L3
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_27
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

19614..20225
-----------------
DNA (612bp)
protein (204aa)
uridine monophosphate synthetase (EC:4.1.1.23 2.4.2.10)
orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase (EC:4.1.1.23 2.4.2.10); K13421 uridine monophosphate synthetase [EC:2.4.2.10 4.1.1.23] bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_28
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(20312..20917)
-----------------
DNA (606bp)
protein (202aa)
cysC; putative adenylylsulfate kinase (APS kinase) (EC:2.7.1.25)
Putative adenylylsulfate kinase (APS kinase) Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W1B7_UNCMA
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_191_29
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(20914..21315)
-----------------
DNA (402bp)
protein (134aa)
Uncharacterized protein Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8DZK6_DICTD
hypothetical protein
Tax=CG_Woesearch_02
Displaying items 1-30 of 41 in total

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