ggKbase home page

PLM4_90_b1_sep16_scaffold_372

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_372_1
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

3..509
-----------------
DNA (507bp)
protein (169aa)
Uncharacterized protein Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7T6V3_9EURY
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_2
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(765..1646)
-----------------
DNA (882bp)
protein (294aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BCW4_METIK
succinyl-CoA synthetase subunit alpha
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_3
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(1649..2797)
-----------------
DNA (1149bp)
protein (383aa)
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta Tax=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta) RepID=B1Y9F9_PYRNV
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_4
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(2812..3270)
-----------------
DNA (459bp)
protein (153aa)
AsnC family transcriptional regulator Tax=Thermofilum sp. 1910b RepID=S5ZV40_9CREN
Transcriptional regulator, AsnC family
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_5
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

3484..3762
-----------------
DNA (279bp)
protein (93aa)
DNA/RNA-binding protein Alba Tax=Uncultured methanogenic archaeon RC-I RepID=ALBA_UNCMA
albA; DNA/RNA-binding protein Alba
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_6
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

3832..4341
-----------------
DNA (510bp)
protein (170aa)
Transcription elongation factor Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QH81_9EURY
nusA; transcription elongation factor NusA-like protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_7
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

4353..5678
-----------------
DNA (1326bp)
protein (442aa)
Aspartate--tRNA ligase Tax=Methanobacterium sp. MB1 RepID=U6EAL9_9EURY
aspS; aspartyl-tRNA synthetase AspS
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_8
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

5773..7290
-----------------
DNA (1518bp)
protein (506aa)
amidophosphoribosyltransferase (EC:2.4.2.14)
hypothetical protein Tax=crenarchaeote SCGC AAA261-N23 RepID=UPI0003762EAD
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_9
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

7330..8739
-----------------
DNA (1410bp)
protein (470aa)
Putative phosphoribosylamine-glycine ligase (GARS) Tax=uncultured archaeon RepID=D1JDS5_9ARCH
purD; phosphoribosylamine--glycine ligase
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_10
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

8736..9818
-----------------
DNA (1083bp)
protein (361aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI0003661736
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_11
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

9815..10732
-----------------
DNA (918bp)
protein (306aa)
formylmethanofuran--tetrahydromethanopterin formyltransferase (EC:2.3.1.101)
Formylmethanofuran--tetrahydromethanopterin N-formyltransferase Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D2P8_METSW
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_12
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

10729..11694
-----------------
DNA (966bp)
protein (322aa)
PfkB domain protein Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D2P9_METSW
PfkB domain-containing protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_13
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(11709..12485)
-----------------
DNA (777bp)
protein (259aa)
phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RYU8_FERPA
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_14
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(12489..14870)
-----------------
DNA (2382bp)
protein (794aa)
purL; phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
hypothetical protein Tax=candidate division YNPFFA RepID=UPI0003622604
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_15
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(14867..15118)
-----------------
DNA (252bp)
protein (84aa)
Phosphoribosylformylglycinamidine synthase PurS Tax=Methanolobus psychrophilus R15 RepID=K4M8T2_9EURY
phosphoribosylformylglycinamidine synthase PurS
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_16
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(15177..16253)
-----------------
DNA (1077bp)
protein (359aa)
Phosphoribosylformylglycinamidine cyclo-ligase Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=PUR5_METKA
phosphoribosylaminoimidazole synthetase
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_372_17
unknown

Not on your lists

comp(16433..16825)
-----------------
DNA (393bp)
protein (131aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_372_18
unknown

Not on your lists

17047..17595
-----------------
DNA (549bp)
protein (183aa)

This feature has no annotations

Displaying 18 items

View Taxonomy