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PLM4_90_b1_sep16_scaffold_604

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_604_1
RBG_16_Bathyarchaeota_57_9_curated, Bathyarchaeota, Archaea

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comp(1..2007)
-----------------
DNA (2007bp)
protein (669aa)
rca:Rcas_0372 HAD superfamily ATPase; K01537 Ca2+-transporting ATPase [EC:3.6.3.8] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
Cation-transporting ATPase, E1-E2 family
Tax=RBG_16_Bathyarchaeota_57_9_curated
PLM4_90_b1_sep16_scaffold_604_2
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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2139..4229
-----------------
DNA (2091bp)
protein (697aa)
K(+)-insensitive pyrophosphate-energized proton pump Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RQ50_9FIRM
inorganic pyrophosphatase
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_604_3
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(4404..5477)
-----------------
DNA (1074bp)
protein (358aa)
Hydrogenase expression/formation protein HypE Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7T9E3_9EURY
hydrogenase expression/formation protein HypE
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_604_4
Methanocaldococcus sp. FS406-22, Methanocaldococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(5831..7780)
-----------------
DNA (1950bp)
protein (650aa)
Formate dehydrogenase, alpha subunit Tax=Methanocaldococcus sp. (strain FS406-22) RepID=D3S7C2_METSF
formate dehydrogenase, alpha subunit
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:ADC68932.1}; species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus.;" source="Methanocaldococcus sp. (strain FS406-22).;"
PLM4_90_b1_sep16_scaffold_604_5
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(7831..8466)
-----------------
DNA (636bp)
protein (212aa)
Predicted methyltransferase Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PYI6_METTM
methyltransferase
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_604_6
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(8474..9292)
-----------------
DNA (819bp)
protein (273aa)
Probable ribosomal RNA small subunit methyltransferase A Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TV46_9EURY
ksgA; dimethyladenosine transferase
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_604_7
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(9321..9896)
-----------------
DNA (576bp)
protein (192aa)
DNA-binding protein Tax=Pyrococcus furiosus RepID=I6V3M6_9EURY
DNA-binding protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_604_8
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(9952..10290)
-----------------
DNA (339bp)
protein (113aa)
hypothetical protein Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI000363B394
rpb4; RNA polymerase Rpb4
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_604_9
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


comp(10292..10591)
-----------------
DNA (300bp)
protein (100aa)
50S ribosomal protein L21e Tax=Sulfolobus solfataricus RepID=RL21_SULSO
50S ribosomal protein L21e
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_604_10
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(10588..11940)
-----------------
DNA (1353bp)
protein (451aa)
tRNA pseudouridine synthase Pus10 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BCJ4_METIK
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_604_11
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(11965..12417)
-----------------
DNA (453bp)
protein (151aa)
Signal recognition particle 54 kDa protein Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AG85_PYRYC
Suspect SCG annotation. See neighboring gene [PLM4_90_b1_sep16_scaffold_604_12].
signal recognition particle protein Srp54
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_604_12
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists


comp(12389..13348)
-----------------
DNA (960bp)
protein (320aa)
Signal recognition particle 54 kDa protein Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=SRP54_THEKO
signal recognition particle protein Srp54
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_604_13
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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13463..14209
-----------------
DNA (747bp)
protein (249aa)
Putative uncharacterized protein Tax=uncultured archaeon RepID=D1JGQ3_9ARCH
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_604_14
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

14222..14644
-----------------
DNA (423bp)
protein (141aa)
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_604_15
unknown

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14820..15026
-----------------
DNA (207bp)
protein (69aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_604_16
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(15062..15316)
-----------------
DNA (255bp)
protein (85aa)
Translation initiation factor 5A Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AEK9_PYRYC
translation initiation factor IF-5A
Tax=RBG_13_Bathyarchaeota_46_16b_curated
Displaying 16 items

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