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PLM4_90_b1_sep16_scaffold_685

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_685_1
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(2..1375)
-----------------
DNA (1374bp)
protein (458aa)
UPI0003D1BEB0 related cluster Tax=unknown RepID=UPI0003D1BEB0
hypothetical protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_685_2
Thaumarchaeota archaeon SCGC AB-539-E09, Thaumarchaeota, Archaea

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1786..2295
-----------------
DNA (510bp)
protein (170aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TT05_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:EMR73081.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon SCGC AB-539-E09.;"
hypothetical protein
PLM4_90_b1_sep16_scaffold_685_3

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2430..2963
-----------------
DNA (534bp)
protein (178aa)
Uncharacterized protein Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7TT05_9ARCH
Marine sediment metagenome DNA, contig: S01H1_S10697 {ECO:0000313|EMBL:GAG04518.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_90_b1_sep16_scaffold_685_4

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3128..3967
-----------------
DNA (840bp)
protein (280aa)
Marine sediment metagenome DNA, contig: S06H3_L01761 {ECO:0000313|EMBL:GAI08827.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_90_b1_sep16_scaffold_685_5
unknown

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4017..4415
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_685_6
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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4417..5991
-----------------
DNA (1575bp)
protein (525aa)
Type II secretion system-like protein E Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IKM8_NITGG
type II secretion system-like protein E
Type II secretion system-like protein E {ECO:0000313|EMBL:AFU59853.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM4_90_b1_sep16_scaffold_685_7
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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5999..7501
-----------------
DNA (1503bp)
protein (501aa)
Type II secretion system-like protein F Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INR9_NITGG
type II secretion system-like protein F
Type II secretion system-like protein F {ECO:0000313|EMBL:AFU59854.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM4_90_b1_sep16_scaffold_685_8
unknown

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7513..8559
-----------------
DNA (1047bp)
protein (349aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_685_9
unknown

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8556..8981
-----------------
DNA (426bp)
protein (142aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_685_10

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8983..9747
-----------------
DNA (765bp)
protein (255aa)
Marine sediment metagenome DNA, contig: S01H1_S15783 {ECO:0000313|EMBL:GAG23207.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_90_b1_sep16_scaffold_685_11
Dictyoglomus turgidum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

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9732..11123
-----------------
DNA (1392bp)
protein (464aa)
Uncharacterized protein Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E0B8_DICTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK42563.1}; Flags: Precursor;; species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" source="Dictyoglomus turgidum (strain Z-1310 / DSM 6724).;"
PLM4_90_b1_sep16_scaffold_685_12
Candidatus Nitrosoarchaeum limnia, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

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comp(11115..12110)
-----------------
DNA (996bp)
protein (332aa)
Transcription regulator, TrmB Tax=Candidatus Nitrosoarchaeum limnia SFB1 RepID=F3KJ58_9ARCH
Transcription regulator, TrmB {ECO:0000313|EMBL:EGG42586.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum limnia SFB1.;"
transcriptional regulator TrmB
PLM4_90_b1_sep16_scaffold_685_13

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comp(12175..13896)
-----------------
DNA (1722bp)
protein (574aa)
Uncharacterized protein Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IER4_NITGG
Marine sediment metagenome DNA, contig: S06H3_L00524 {ECO:0000313|EMBL:GAI10422.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM4_90_b1_sep16_scaffold_685_14
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(13930..14955)
-----------------
DNA (1026bp)
protein (342aa)
Putative ATPase, AAA-5 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IM03_NITGG
ATPase, AAA-5
Putative ATPase, AAA-5 {ECO:0000313|EMBL:AFU59847.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera gargensis (strain Ga9.2).;"
PLM4_90_b1_sep16_scaffold_685_15
unknown

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15086..15688
-----------------
DNA (603bp)
protein (201aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_685_16

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15980..16567
-----------------
DNA (588bp)
protein (196aa)
Marine sediment metagenome DNA, contig: S06H3_L00524 {ECO:0000313|EMBL:GAI10426.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_90_b1_sep16_scaffold_685_17
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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16638..17168
-----------------
DNA (531bp)
protein (177aa)
Tax=RBG_16_Thaumarchaeota_49_8_curated
PLM4_90_b1_sep16_scaffold_685_18
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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17341..18639
-----------------
DNA (1299bp)
protein (433aa)
Putative glycosyltransferase (Group 1) Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W4S7_UNCMA
putative glycosyltransferase (group 1)
Putative glycosyltransferase (Group 1) {ECO:0000313|EMBL:CAJ36616.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
PLM4_90_b1_sep16_scaffold_685_19
unknown

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comp(18719..19093)
-----------------
DNA (375bp)
protein (125aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_685_20

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comp(19367..20497)
-----------------
DNA (1131bp)
protein (377aa)
Marine sediment metagenome DNA, contig: S01H1_S28303 {ECO:0000313|EMBL:GAG35762.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_90_b1_sep16_scaffold_685_21

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comp(20545..21960)
-----------------
DNA (1416bp)
protein (472aa)
Marine sediment metagenome DNA, contig: S01H1_S28303 {ECO:0000313|EMBL:GAG35762.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying 21 items

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