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PLM4_90_b1_sep16_scaffold_2133

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_2133_1

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3..353
-----------------
DNA (351bp)
protein (117aa)
ATP-dependent DNA ligase (EC:6.5.1.1)
DNA ligase D-like 3'-phosphoesterase domain-containing protein Tax=Thermoplasmatales archaeon SCGC AB-539-N05 RepID=M7TA23_9EURY
ATP-dependent DNA ligase {ECO:0000313|EMBL:AHM02055.1}; species="Archaea; Crenarchaeota; miscellaneous Crenarchaeota group; environmental samples.;" source="uncultured miscellaneous Crenarchaeota group.;"
PLM4_90_b1_sep16_scaffold_2133_2
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(376..666)
-----------------
DNA (291bp)
protein (97aa)
nucleic acid binding OB-fold tRNA/helicase-type bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
OB-fold nucleic acid binding protein
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_2133_3
unknown

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comp(843..1694)
-----------------
DNA (852bp)
protein (284aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_2133_4
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(1742..3250)
-----------------
DNA (1509bp)
protein (503aa)
UPF0219 protein Arcpr_0144 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RFZ1_ARCPA
hydroxymethylglutaryl-CoA synthase
Tax=RBG_13_Bathyarchaeota_46_16b_curated
PLM4_90_b1_sep16_scaffold_2133_5
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

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comp(3253..4449)
-----------------
DNA (1197bp)
protein (399aa)
Acetyl-CoA acetyltransferase Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXC9_FERPA
acetyl-CoA acetyltransferase
Tax=RBG_16_Thaumarchaeota_49_8_curated
PLM4_90_b1_sep16_scaffold_2133_6
Candidatus Korarchaeum cryptofilum, Candidatus Korarchaeum, Korarchaeota, Archaea

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comp(4616..5764)
-----------------
DNA (1149bp)
protein (383aa)
Saccharopine dehydrogenase Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L5I2_KORCO
saccharopine dehydrogenase
Saccharopine dehydrogenase {ECO:0000313|EMBL:ACB07711.1}; species="Archaea; Korarchaeota; Candidatus Korarchaeum.;" source="Korarchaeum cryptofilum (strain OPF8).;"
PLM4_90_b1_sep16_scaffold_2133_7
RBG_13_Bathyarchaeota_52_12_curated, Bathyarchaeota, Archaea

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5900..6208
-----------------
DNA (309bp)
protein (103aa)
Protein translation factor SUI1 homolog Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJ96_NITGG
protein translation factor SUI1
Tax=RBG_13_Bathyarchaeota_52_12_curated
PLM4_90_b1_sep16_scaffold_2133_8
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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comp(6448..6939)
-----------------
DNA (492bp)
protein (164aa)
Transcription initiation factor IIB Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IEW9_NITGG
Transcription initiation factor IIB (TFIIB)
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM4_90_b1_sep16_scaffold_2133_9
Thaumarchaeota archaeon SCGC AB-539-E09, Thaumarchaeota, Archaea

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comp(6917..7327)
-----------------
DNA (411bp)
protein (137aa)
Transcription initiation factor IIB Tax=Thaumarchaeota archaeon SCGC AB-539-E09 RepID=M7U4W7_9ARCH
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon SCGC AB-539-E09.;"
transcription initiation factor TFIIIB, Brf1 subunit/transcription initiation factor TFIIB
PLM4_90_b1_sep16_scaffold_2133_trna_1
unknown

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7601..7673
-----------------
DNA (73bp)
transferRNA Gln
PLM4_90_b1_sep16_scaffold_2133_10
unknown

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comp(7692..7859)
-----------------
DNA (168bp)
protein (56aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_2133_11
Pyrococcus furiosus, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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8199..10067
-----------------
DNA (1869bp)
protein (623aa)
DNA repair helicase rad3 Tax=Pyrococcus furiosus COM1 RepID=I6UPJ2_9EURY
DNA repair helicase rad3
DNA repair helicase rad3 {ECO:0000313|EMBL:AFN03726.1}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus furiosus COM1.;"
PLM4_90_b1_sep16_scaffold_2133_12
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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10876..11424
-----------------
DNA (549bp)
protein (183aa)
Cupin 2 conserved barrel domain protein Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KQE2_ARCVS
cupin
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:AEA46575.1}; species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus veneficus (strain DSM 11195 / SNP6).;"
Displaying 13 items

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