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PLM4_90_coex_sep16_scaffold_1156

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_coex_sep16_scaffold_1156_1
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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150..1460
DNA (1311bp) protein (437aa)
Putative uncharacterized protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XSB2_9BACT
GTPase
Tax=RBG_16_Euryarchaeota_67_27_curated
PLM4_90_coex_sep16_scaffold_1156_trna_1
unknown

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1710..1794
DNA (85bp)
transferRNA Leu
PLM4_90_coex_sep16_scaffold_1156_2
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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comp(1809..2417)
DNA (609bp) protein (203aa)
Putative Ras family protein Tax=uncultured marine microorganism HF4000_APKG10F13 RepID=B3TBS9_9ZZZZ
small GTP-binding protein
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM4_90_coex_sep16_scaffold_1156_3
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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2594..4249
DNA (1656bp) protein (552aa)
valS; valine--tRNA ligase (EC:6.1.1.9)
Valine--tRNA ligase Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IF88_NITGG
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM4_90_coex_sep16_scaffold_1156_4
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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4210..4827
DNA (618bp) protein (206aa)
Valyl-tRNA synthetase Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L6Q6_KORCO
Suspect SCG annotation. See neighboring gene [PLM4_90_coex_sep16_scaffold_1156_3].
valS; valyl-tRNA synthetase
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM4_90_coex_sep16_scaffold_1156_5
R_Elusimicrobia_39_32, Elusimicrobia, Bacteria

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4909..5337
DNA (429bp) protein (143aa)
Thiol-disulfide isomerase or thioredoxin Tax=Melioribacter roseus (strain P3M) RepID=I6ZNT6_MELRP
thiol-disulfide isomerase or thioredoxin
Tax=RIFCSPLOWO2_02_FULL_Elusimicrobia_39_32_curated
PLM4_90_coex_sep16_scaffold_1156_6
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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comp(5334..5879)
DNA (546bp) protein (182aa)
CBS domain containing membrane protein Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJU5_9FIRM
putative signal transduction protein with CBS domains
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
PLM4_90_coex_sep16_scaffold_1156_7
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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6072..6770
DNA (699bp) protein (233aa)
Exosome complex component Rrp4 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5L6_9EURY
exosome complex RNA-binding protein Rrp4
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
PLM4_90_coex_sep16_scaffold_1156_8
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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6770..7546
DNA (777bp) protein (259aa)
Exosome complex component Rrp41 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T906_9EURY
exosome complex exonuclease Rrp41
Tax=RBG_16_Euryarchaeota_67_27_curated
PLM4_90_coex_sep16_scaffold_1156_9
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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7543..8313
DNA (771bp) protein (257aa)
Exosome complex component Rrp42 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=D3TBQ8_ACIB4
3' exoribonuclease
Tax=RBG_16_Euryarchaeota_68_13_curated
PLM4_90_coex_sep16_scaffold_1156_10
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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8319..8567
DNA (249bp) protein (83aa)
50S ribosomal protein L37Ae Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RL37A_METKA
rpl37ae; 50S ribosomal protein L37
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
PLM4_90_coex_sep16_scaffold_1156_11
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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8569..8703
DNA (135bp) protein (45aa)
rpoP; DNA-directed RNA polymerase subunit P (EC:2.7.7.6)
DNA-directed RNA polymerase subunit P Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T548_9EURY
Tax=RBG_16_Euryarchaeota_68_13_curated
PLM4_90_coex_sep16_scaffold_1156_12
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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8718..8939
DNA (222bp) protein (74aa)
Uncharacterized protein Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T5L2_9EURY
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_13_curated
PLM4_90_coex_sep16_scaffold_1156_13
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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8936..9298
DNA (363bp) protein (121aa)
Prefoldin subunit beta Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T903_9EURY
pfdB; prefoldin subunit beta
Tax=RBG_16_Euryarchaeota_67_27_curated
PLM4_90_coex_sep16_scaffold_1156_14
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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9372..10055
DNA (684bp) protein (228aa)
Putative uncharacterized protein Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=D3TB23_ACIB4
hypothetical protein
Tax=RBG_16_Euryarchaeota_68_13_curated
PLM4_90_coex_sep16_scaffold_1156_15
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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10064..10600
DNA (537bp) protein (179aa)
Cytidylate kinase Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NPG2_HALBP
cytidylate kinase
Tax=RBG_16_Euryarchaeota_67_27_curated
PLM4_90_coex_sep16_scaffold_1156_16
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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10597..11553
DNA (957bp) protein (319aa)
Probable tRNA pseudouridine synthase B Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=TRUB_METKA
TruB; H/ACA RNA-protein complex component Cbf5p
Tax=RBG_16_Euryarchaeota_68_12_curated
PLM4_90_coex_sep16_scaffold_1156_17
unknown

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comp(11619..12098)
DNA (480bp) protein (160aa)

This feature has no annotations

PLM4_90_coex_sep16_scaffold_1156_18
RBG_19FT_COMBO_Euryarchaeota_56_21_curated, Euryarchaeota, Archaea

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12339..12530
DNA (192bp) protein (64aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00037E58BB
SSU ribosomal protein S17e
Tax=RBG_19FT_COMBO_Euryarchaeota_56_21_curated
PLM4_90_coex_sep16_scaffold_1156_19
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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12584..13606
DNA (1023bp) protein (341aa)
Antibiotic transport system ATP-binding protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
putative ABC transporter ATP-binding protein
Tax=RBG_16_Euryarchaeota_68_13_curated
PLM4_90_coex_sep16_scaffold_1156_20
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

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13603..14466
DNA (864bp) protein (288aa)
ABC-2 type transport system protein Tax=uncultured candidate division OP1 bacterium RepID=H5SQX1_9BACT
ABC transporter
Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
PLM4_90_coex_sep16_scaffold_1156_21
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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14481..15335
DNA (855bp) protein (285aa)
ABC-2 type transport system protein Tax=uncultured candidate division OP1 bacterium RepID=H5SQX2_9BACT
ABC transporter permease
Tax=RBG_16_Euryarchaeota_68_13_curated
PLM4_90_coex_sep16_scaffold_1156_22
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(15576..15965)
DNA (390bp) protein (130aa)
ribonuclease p protein subunit rpp21 (EC:3.1.26.5)
Ribonuclease P protein component 4 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXE4_METFV
Tax=RBG_16_Euryarchaeota_68_13_curated
PLM4_90_coex_sep16_scaffold_1156_23
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(16015..17379)
DNA (1365bp) protein (455aa)
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase bin=GWC2_CPR2_39_35 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=GWC2_CPR2_39_35 organism_group=CPR2 organism_desc=Candidate for curation
Tax=RBG_16_Euryarchaeota_67_27_curated
PLM4_90_coex_sep16_scaffold_1156_24
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(17385..18203)
DNA (819bp) protein (273aa)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI000375D1B3
putative transcriptional regulator, contains C-terminal CBS domains
Tax=RBG_16_Euryarchaeota_68_13_curated
PLM4_90_coex_sep16_scaffold_1156_25
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(18203..18739)
DNA (537bp) protein (179aa)
Archaeal chlorohydrolase family protein Tax=uncultured euryarchaeote Alv-FOS1 RepID=Q3SAA2_9EURY
amidohydrolase
Tax=RBG_16_Euryarchaeota_67_27_curated
PLM4_90_coex_sep16_scaffold_1156_26
RBG_16_Euryarchaeota_67_27_curated, Euryarchaeota, Archaea

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comp(18736..19329)
DNA (594bp) protein (198aa)
mtaD1; 5-methylthioadenosine/S-adenosylhomocysteine deaminase (EC:3.5.4.28 3.5.4.31)
hypothetical protein Tax=Methanomassiliicoccus luminyensis RepID=UPI00035FA791
Tax=RBG_16_Euryarchaeota_67_27_curated
PLM4_90_coex_sep16_scaffold_1156_27
RBG_16_Euryarchaeota_68_13_curated, Euryarchaeota, Archaea

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comp(19654..20316)
DNA (663bp) protein (221aa)
Tax=RBG_16_Euryarchaeota_68_13_curated
Displaying 28 items

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