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QC1_scaffold_1257

Search features with annotation key words

Displaying 27 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
QC1_scaffold_1257_1
R_OD1_Kaiserbacteria_56_24, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2..466)
DNA (465bp) protein (155aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI000370105A
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_OD1_Kaiserbacteria_56_24_curated
QC1_scaffold_1257_2
unknown

Not on your lists

comp(469..810)
DNA (342bp) protein (114aa)

This feature has no annotations

QC1_scaffold_1257_3
unknown

Not on your lists

1003..1230
DNA (228bp) protein (76aa)

This feature has no annotations

QC1_scaffold_1257_trna_1
unknown

Not on your lists

1289..1360
DNA (72bp)
transferRNA Gly
QC1_scaffold_1257_4
GWC1_OD1_41_7, Parcubacteria, Bacteria

Not on your lists

1465..2928
DNA (1464bp) protein (488aa)
PolyA polymerase family protein, poly(A) polymerase {ECO:0000313|EMBL:KKS18635.1}; EC=2.7.7.19 {ECO:0000313|EMBL:KKS18635.1};; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_41_7.;"
bpo:BP951000_0805 polyA polymerase family protein; K00970 poly(A) polymerase [EC:2.7.7.19] bin=GWC1_OD1_38_17 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
polyA polymerase
QC1_scaffold_1257_5
unknown

Not on your lists

comp(2933..3538)
DNA (606bp) protein (202aa)

This feature has no annotations

QC1_scaffold_1257_6
GWC1_OD1_41_7, Parcubacteria, Bacteria

Not on your lists

comp(3593..4285)
DNA (693bp) protein (231aa)
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease III Tax=Bryantella formatexigens DSM 14469 RepID=C6LCP3_9FIRM bin=ACD7 species=Marvinbryantia formatexigens genus=Marvinbryantia taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
Ribonuclease 3 {ECO:0000313|EMBL:KKS18554.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_41_7.;"
QC1_scaffold_1257_7
GWC1_OD1_41_7, Parcubacteria, Bacteria

Not on your lists

comp(4266..4712)
DNA (447bp) protein (149aa)
Transcription antitermination factor NusB, N utilization substance protein B {ECO:0000313|EMBL:KKS18553.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_41_7.;"
N utilization substance protein B homolog bin=GWC2_OD1_43_27 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
putative transcription termination factor
QC1_scaffold_1257_8
Treponema brennaborense, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists


comp(4713..4913)
DNA (201bp) protein (67aa)
50S ribosomal protein L32 Tax=Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) RepID=F4LN74_TREBD
50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3).;"
QC1_scaffold_1257_9
R_RIF_OD1_13_49_20, RIF-OD1-13, Parcubacteria, Bacteria

Not on your lists

comp(4961..5569)
DNA (609bp) protein (203aa)
ndk; nucleoside diphosphate kinase (EC:2.7.4.6)
hypothetical protein Tax=unclassified Crenarchaeota (miscellaneous) RepID=UPI000377FCFB
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_13_49_20_curated
QC1_scaffold_1257_10
RifOxyA12_full_OD1_Moranbacteria_44_15_curated, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5566..6483)
DNA (918bp) protein (306aa)
ftsX; cell division ABC transporter permease; K09811 cell division transport system permease protein bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
cell division protein FtsX
Tax=RifOxyA12_full_OD1_Moranbacteria_44_15_curated
QC1_scaffold_1257_11

Not on your lists

comp(6487..7170)
DNA (684bp) protein (228aa)
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:KKT89084.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_45_10.;"
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
ftsE; cell division ATP-binding protein FtsE
QC1_scaffold_1257_12
R_OP11_Curtissbacteria_38_11b, Curtissbacteria, Microgenomates, Bacteria

Not on your lists

comp(7177..8115)
DNA (939bp) protein (313aa)
Peptide chain release factor 2 bin=GWC1_OD1_38_17 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
peptide chain release factor 2 (bRF-2)
Tax=RIFCSPLOWO2_01_FULL_OP11_Curtissbacteria_38_11b_curated
QC1_scaffold_1257_13
GWC1_OD1_41_7, Parcubacteria, Bacteria

Not on your lists

comp(8175..9623)
DNA (1449bp) protein (483aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036D9163
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000313|EMBL:KKS18975.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_41_7.;"
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
QC1_scaffold_1257_14
GWC1_OD1_41_7, Parcubacteria, Bacteria

Not on your lists

9647..10207
DNA (561bp) protein (187aa)
Peptidyl-tRNA hydrolase {ECO:0000313|EMBL:KKS18900.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_41_7.;"
Peptidyl-tRNA hydrolase bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
pth; peptidyl-tRNA hydrolase
QC1_scaffold_1257_15
GWC1_OD1_41_7, Parcubacteria, Bacteria

Not on your lists

10204..11190
DNA (987bp) protein (329aa)
Putative uncharacterized protein Tax=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) RepID=A3CUB4_METMJ
Uncharacterized protein {ECO:0000313|EMBL:KKS18901.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_41_7.;"
hypothetical protein
QC1_scaffold_1257_16
GWC1_OD1_41_7, Parcubacteria, Bacteria

Not on your lists

comp(11362..12813)
DNA (1452bp) protein (484aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036EBB48
Translation initiation factor IF-2 {ECO:0000313|EMBL:KKS17765.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_41_7.;"
hypothetical protein
QC1_scaffold_1257_17
MPI_Marinimicrobia_46_47, SAR406, SAR406, Marinimicrobia (Marine group A), Bacteria

Not on your lists

comp(12846..13121)
DNA (276bp) protein (92aa)
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit C (EC:6.3.5.-)
glutamyl-tRNA amidotransferase subunit C Tax=Gracilibacillus lacisalsi RepID=UPI000380938B
Tax=MPI_Marinimicrobia_46_47
QC1_scaffold_1257_18
GWA2_OD1_42_9_A833, Azambacteria, Parcubacteria, Bacteria

Not on your lists

comp(13144..13959)
DNA (816bp) protein (272aa)
prepilin peptidase (EC:3.4.23.43)
Prepilin peptidase {ECO:0000313|EMBL:KKS75593.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWA2_42_9.;"
Prepilin peptidase bin=GWC2_OD1_43_27 species=ACD37 genus=ACD37 taxon_order=ACD37 taxon_class=ACD37 phylum=OP11 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
QC1_scaffold_1257_19
GWC1_OD1_41_7, Parcubacteria, Bacteria

Not on your lists

comp(13962..15167)
DNA (1206bp) protein (402aa)
hypothetical protein Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037DEC08
Type II secretion system F domain protein {ECO:0000313|EMBL:KKS18758.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_41_7.;"
type II secretion system F domain-containing protein
QC1_scaffold_1257_20
GWC1_OD1_41_7, Parcubacteria, Bacteria

Not on your lists

comp(15164..16225)
DNA (1062bp) protein (354aa)
hypothetical protein Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000373007F
Twitching motility protein {ECO:0000313|EMBL:KKS18757.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_41_7.;"
twitching motility protein
QC1_scaffold_1257_21
GWC1_OD1_41_7, Parcubacteria, Bacteria

Not on your lists

comp(16225..17934)
DNA (1710bp) protein (570aa)
Type II secretion system protein E, type IV pilus assembly protein PilB {ECO:0000313|EMBL:KKS18756.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_41_7.;"
Type II secretion system protein E bin=GWC1_OD1_38_17 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
type IV-A pilus assembly ATPase PilB
QC1_scaffold_1257_22
unknown

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comp(17931..18206)
DNA (276bp) protein (92aa)

This feature has no annotations

QC1_scaffold_1257_23
unknown

Not on your lists

comp(18199..18774)
DNA (576bp) protein (192aa)

This feature has no annotations

QC1_scaffold_1257_24
unknown

Not on your lists

comp(18771..19292)
DNA (522bp) protein (174aa)

This feature has no annotations

QC1_scaffold_1257_25
GWC1_OD1_41_7, Parcubacteria, Bacteria

Not on your lists

comp(19304..20347)
DNA (1044bp) protein (348aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS18752.1}; species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC1_41_7.;"
QC1_scaffold_1257_26
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20409..20891
DNA (483bp) protein (161aa)
Putative amidophosphoribosyltransferase Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MHN8_9CLOT
putative amidophosphoribosyltransferase
Putative amidophosphoribosyltransferase {ECO:0000313|EMBL:AGF54431.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Displaying 27 items

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