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QC4_scaffold_560

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
QC4_scaffold_560_1
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(1..267)
DNA (267bp) protein (89aa)
NifU-like Fe-S cluster assembly protein ; K04488 nitrogen fixation protein NifU and related proteins bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
NifU-like Fe-S cluster assembly protein
Tax=CG_Elusi_05
QC4_scaffold_560_2
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(281..1522)
DNA (1242bp) protein (414aa)
adg:Adeg_0423 cysteine desulfurase NifS (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] bin=CD_OP8_4m species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
cysteine desulfurase NifS (EC:2.8.1.7)
Tax=CG_Elusi_05
QC4_scaffold_560_3
RIFOXYA2_FULL_Elusimicrobia_40_6_curated, Elusimicrobia, Bacteria

Not on your lists

comp(1552..1779)
DNA (228bp) protein (76aa)
Uncharacterized protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
response regulator SirA
Tax=RIFOXYA2_FULL_Elusimicrobia_40_6_curated
QC4_scaffold_560_4
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

Not on your lists

comp(1776..2246)
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P8K2_9BACT
hypothetical protein
Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
QC4_scaffold_560_5
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(2271..3443)
DNA (1173bp) protein (391aa)
Permease bin=GWF2_OP3_38_59 species=Simiduia agarivorans genus=Simiduia taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
hypothetical protein
Tax=CG_Elusi_05
QC4_scaffold_560_6
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3446..3634)
DNA (189bp) protein (63aa)
Tax=RBG_16_Deltaproteobacteria_49_23_curated
QC4_scaffold_560_7
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

Not on your lists

comp(3654..3992)
DNA (339bp) protein (113aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGU7_9BACT
hypothetical protein
Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
QC4_scaffold_560_8
RIFOXYA12_FULL_WOR_1_43_27_curated, WOR-1, Bacteria

Not on your lists

comp(4005..4172)
DNA (168bp) protein (56aa)
Tax=RIFOXYA12_FULL_WOR_1_43_27_curated
QC4_scaffold_560_9
unknown

Not on your lists

comp(4250..4360)
DNA (111bp) protein (37aa)

This feature has no annotations

QC4_scaffold_560_10
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(4372..5571)
DNA (1200bp) protein (400aa)
Flavodoxin/nitric oxide synthase Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TNV5_ALKMQ
flavodoxin/nitric oxide synthase
Tax=CG_Elusi_05
QC4_scaffold_560_11
RIFOXYB2_FULL_Elusimicrobia_48_7_curated, Elusimicrobia, Bacteria

Not on your lists

comp(5657..6142)
DNA (486bp) protein (162aa)
hypothetical protein Tax=Omnitrophica bacterium SCGC AAA252-B19 RepID=UPI000365FF94
rubrerythrin
Tax=RIFOXYB2_FULL_Elusimicrobia_48_7_curated
QC4_scaffold_560_12
CG_Elusi_03, Elusimicrobia, Bacteria

Not on your lists

comp(6165..6551)
DNA (387bp) protein (129aa)
Desulfoferrodoxin Tax=Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108) RepID=E4Q9J3_CALH1
desulfoferrodoxin
Tax=CG_Elusi_03
QC4_scaffold_560_13
RIFOXYB2_FULL_WOR_2_38_16_curated, WOR-2, Bacteria

Not on your lists

comp(6564..6983)
DNA (420bp) protein (140aa)
Putative uncharacterized protein bin=GWF2_OP3_38_59 species=Methanosarcina barkeri genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
Hypothetical protein
Tax=RIFOXYB2_FULL_WOR_2_38_16_curated
QC4_scaffold_560_14

Not on your lists

comp(6986..7561)
DNA (576bp) protein (192aa)
Marine sediment metagenome DNA, contig: S03H2_L00085 {ECO:0000313|EMBL:GAH27428.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
rubrerythrin bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
rubrerythrin
QC4_scaffold_560_15

Not on your lists

comp(7632..8354)
DNA (723bp) protein (241aa)
Marine sediment metagenome DNA, contig: S01H4_C00399 {ECO:0000313|EMBL:GAG71827.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
mta:Moth_1288 flavin reductase-like, FMN-binding bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
flavin reductase domain-containing FMN-binding protein
QC4_scaffold_560_16
Bacteroides sp. CAG:875, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8327..8752)
DNA (426bp) protein (142aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI000380DAC0
Uncharacterized protein {ECO:0000313|EMBL:CDD50589.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:875.;"
Fur family transcriptional regulator
QC4_scaffold_560_17
Dictyoglomus thermophilum, Dictyoglomus, Dictyoglomales, Dictyoglomia, Dictyoglomi, Bacteria

Not on your lists

9135..10430
DNA (1296bp) protein (432aa)
permease Tax=Coprothermobacter platensis RepID=UPI000364C8A5
xanthine/uracil permease family protein
Xanthine/uracil permease family protein {ECO:0000313|EMBL:ACI19237.1}; species="Bacteria; Dictyoglomi; Dictyoglomales; Dictyoglomaceae; Dictyoglomus.;" source="Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12).;"
QC4_scaffold_560_18
RIFOXYA2_FULL_Elusimicrobia_47_53_curated, Elusimicrobia, Bacteria

Not on your lists

10719..11009
DNA (291bp) protein (97aa)
10 kDa chaperonin bin=GWA2_Elusimicrobia_66_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
chaperonin Cpn10
Tax=RIFOXYA2_FULL_Elusimicrobia_47_53_curated
QC4_scaffold_560_19
RIFOXYB2_FULL_Elusimicrobia_48_7_curated, Elusimicrobia, Bacteria

Not on your lists

11045..12664
DNA (1620bp) protein (540aa)
60 kDa chaperonin Tax=Uncultured termite group 1 bacterium phylotype Rs-D17 RepID=CH60_UNCTG
chaperonin Cpn60
Tax=RIFOXYB2_FULL_Elusimicrobia_48_7_curated
QC4_scaffold_560_20
RBG_13_Planctomycetes_46_10_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(12846..13772)
DNA (927bp) protein (309aa)
hypothetical protein Tax=Staphylococcus vitulinus RepID=UPI0002F78D93
sodium/bile acid transporter family protein
Tax=RBG_13_Planctomycetes_46_10_curated
QC4_scaffold_560_21
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(13778..14545)
DNA (768bp) protein (256aa)
acetylglutamate kinase (EC:2.7.2.8)
acetylglutamate kinase Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B59543
Tax=CG_Elusi_05
QC4_scaffold_560_22
GWA2_Elusimicrobia_51_34_curated, Elusimicrobia, Bacteria

Not on your lists

comp(14814..15068)
DNA (255bp) protein (85aa)
M20/DapE family protein YgeY bin=GWA2_Elusimicrobia_51_34 species=Kosmotoga olearia genus=Kosmotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
peptidase
Tax=GWA2_Elusimicrobia_51_34_curated
QC4_scaffold_560_23
BJP_IG2102_Elusimicrobia_52_42, Elusimicrobia lineage II, Elusimicrobia, Bacteria

Not on your lists

comp(15069..15383)
DNA (315bp) protein (105aa)
M20/DapE family protein YgeY bin=GWA2_Elusimicrobia_51_34 species=Kosmotoga olearia genus=Kosmotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
selenium metabolism hydrolase
Tax=BJP_IG2102_Elusimicrobia_52_42
QC4_scaffold_560_24
BJP_IG2102_Elusimicrobia_52_42, Elusimicrobia lineage II, Elusimicrobia, Bacteria

Not on your lists

comp(15462..16022)
DNA (561bp) protein (187aa)
M20/DapE family protein YgeY bin=GWA2_Elusimicrobia_51_34 species=Kosmotoga olearia genus=Kosmotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
peptidase
Tax=BJP_IG2102_Elusimicrobia_52_42
QC4_scaffold_560_25
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(16400..17248)
DNA (849bp) protein (283aa)
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC:3.5.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase {ECO:0000256|HAMAP-Rule:MF_00388, ECO:0000256|SAAS:SAAS00041388}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_00388, ECO:0000256|SAAS:SAAS00041386};; UDP-3-O-acyl-GlcNAc deacetylase {ECO:0000256|HAMAP-Rule:MF_00388}; species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter.;" source="Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC; 101012 / SSM1).;"
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PAC2_DEFDS
QC4_scaffold_560_26
RIFOXYA2_FULL_Elusimicrobia_40_6_curated, Elusimicrobia, Bacteria

Not on your lists

comp(17262..17966)
DNA (705bp) protein (235aa)
hypothetical protein bin=GWA2_Elusimicrobia_66_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
Tax=RIFOXYA2_FULL_Elusimicrobia_40_6_curated
QC4_scaffold_560_27
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

Not on your lists

comp(18010..20277)
DNA (2268bp) protein (756aa)
Outer membrane protein assembly complex, YaeT protein bin=GWA2_Elusi_like_61_42 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi
outer membrane protein assembly factor YaeT
Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
QC4_scaffold_560_trna_1
unknown

Not on your lists

comp(20299..20371)
DNA (73bp)
transferRNA Arg
QC4_scaffold_560_28
RIFOXYB2_FULL_Elusimicrobia_48_7_curated, Elusimicrobia, Bacteria

Not on your lists


comp(20443..23127)
DNA (2685bp) protein (895aa)
Alanine--tRNA ligase Tax=Uncultured termite group 1 bacterium phylotype Rs-D17 RepID=SYA_UNCTG
alanyl-tRNA synthetase
Tax=RIFOXYB2_FULL_Elusimicrobia_48_7_curated
QC4_scaffold_560_29
RIFOXYA2_FULL_Elusimicrobia_40_6_curated, Elusimicrobia, Bacteria

Not on your lists

comp(23136..23942)
DNA (807bp) protein (269aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit Tax=Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) RepID=E4S8A2_CALKI
dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain
Tax=RIFOXYA2_FULL_Elusimicrobia_40_6_curated
Displaying items 1-30 of 44 in total

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