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QC4_scaffold_1996

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
QC4_scaffold_1996_1
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(492..965)
DNA (474bp) protein (158aa)
Cytosine/adenosine deaminase Tax=Clostridium sp. CAG:780 RepID=R5PW37_9CLOT
cytidine/deoxycytidylate deaminase
Tax=CG_Elusi_05
QC4_scaffold_1996_2
BJP_IG2157_Clostridiales_35_16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1026..1328)
DNA (303bp) protein (101aa)
putative transcriptional regulator
Tax=BJP_IG2157_Clostridiales_35_16
QC4_scaffold_1996_3
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

comp(1611..2900)
DNA (1290bp) protein (430aa)
aldehyde ferredoxin oxidoreductase (EC:1.2.7.5)
Aldehyde ferredoxin oxidoreductase bin=GWD2_Chloroflexi_49_16 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
Tax=GWC2_Chloroflexi_49_37_curated
QC4_scaffold_1996_4
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

comp(3028..3273)
DNA (246bp) protein (82aa)
Aldehyde ferredoxin oxidoreductase bin=GWD2_Chloroflexi_49_16 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
aldehyde:ferredoxin oxidoreductase
Tax=GWC2_Chloroflexi_49_37_curated
QC4_scaffold_1996_5
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3335..3658)
DNA (324bp) protein (108aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein Tax=Thermincola potens (strain JR) RepID=D5X867_THEPJ
4Fe-4S ferredoxin
4Fe-4S ferredoxin iron-sulfur binding domain protein {ECO:0000313|EMBL:ADG82787.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
QC4_scaffold_1996_6
Sulfurihydrogenibium azorense, Sulfurihydrogenibium, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(3857..4600)
DNA (744bp) protein (248aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; species="Bacteria; Aquificae; Aquificales; Hydrogenothermaceae; Sulfurihydrogenibium.;" source="Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825).;"
ABC transporter, ATP-binding protein Tax=Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) RepID=C1DT66_SULAA
lolD; ABC transporter ATP-binding protein
QC4_scaffold_1996_7
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(4593..5801)
DNA (1209bp) protein (403aa)
ABC transporter permease Tax=Desulfovibrio desulfuricans RepID=UPI00037BB05B
LolC/E family lipoprotein releasing system, transmembrane protein
Tax=CG_Elusi_05
QC4_scaffold_1996_8
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(5798..6616)
DNA (819bp) protein (273aa)
Lysine--tRNA ligase Tax=Thermobrachium celere DSM 8682 RepID=R7RUN2_9CLOT
lysyl-tRNA synthetase (class II)
Tax=CG_Elusi_05
QC4_scaffold_1996_9
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

Not on your lists

comp(6661..7326)
DNA (666bp) protein (222aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YLD6_THEYD
Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
QC4_scaffold_1996_10
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(7331..8602)
DNA (1272bp) protein (424aa)
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
Adenosylhomocysteinase Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YHE1_THEYD
Tax=CG_Elusi_05
QC4_scaffold_1996_11
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(8635..9816)
DNA (1182bp) protein (394aa)
methionine adenosyltransferase (EC:2.5.1.6)
hypothetical protein Tax=Eudoraea adriatica RepID=UPI000371CB7D
Tax=CG_Elusi_05
QC4_scaffold_1996_12
RIFOXYA2_FULL_Elusimicrobia_47_53_curated, Elusimicrobia, Bacteria

Not on your lists

comp(10344..11372)
DNA (1029bp) protein (343aa)
Nucleotidyl transferase bin=GWA2_Elusimicrobia_66_18 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
nucleotidyl transferase
Tax=RIFOXYA2_FULL_Elusimicrobia_47_53_curated
QC4_scaffold_1996_13
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

Not on your lists

comp(11400..12794)
DNA (1395bp) protein (465aa)
Putative glycosyltransferase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZQ6_CALAS
putative glycosyltransferase
Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
QC4_scaffold_1996_14
RIFOXYB2_FULL_Elusimicrobia_50_12_curated, Elusimicrobia, Bacteria

Not on your lists

comp(12804..14195)
DNA (1392bp) protein (464aa)
WD40-like protein Beta Propeller Tax=uncultured bacterium RepID=K2AGZ2_9BACT
tol-pal system beta propeller repeat protein TolB
Tax=RIFOXYB2_FULL_Elusimicrobia_50_12_curated
QC4_scaffold_1996_15
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

Not on your lists

comp(14198..14554)
DNA (357bp) protein (119aa)
UPF0102 protein CDSM653_223 Tax=Carboxydibrachium pacificum DSM 12653 RepID=B7R9S5_9THEO
hypothetical protein
Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
QC4_scaffold_1996_16
Clostridium sp. CAG:964, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14556..15218)
DNA (663bp) protein (221aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:964.;"
ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII Tax=Clostridium sp. CAG:964 RepID=R6U084_9CLOT
QC4_scaffold_1996_17
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15193..15582)
DNA (390bp) protein (130aa)
50S ribosomal protein L19 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=RL19_CALS8
50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000255|HAMAP-Rule:MF_00402}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.;" source="Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 /; Tp8T 6331).;"
QC4_scaffold_1996_18
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

Not on your lists

comp(15572..16324)
DNA (753bp) protein (251aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N1)-methyltransferase Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B79B10
Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
QC4_scaffold_1996_19
unknown

Not on your lists

comp(16321..16836)
DNA (516bp) protein (172aa)
QC4_scaffold_1996_20
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

comp(16901..17176)
DNA (276bp) protein (92aa)
UPF0109 protein TGRD_021 Tax=Uncultured termite group 1 bacterium phylotype Rs-D17 RepID=B1GZ22_UNCTG
hypothetical protein
Tax=CG_Elusi_05
QC4_scaffold_1996_21
GWA2_Elusimicrobia_51_34_curated, Elusimicrobia, Bacteria

Not on your lists


comp(17206..17487)
DNA (282bp) protein (94aa)
30S ribosomal protein S16 bin=GWA2_Elusimicrobia_51_34 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
30S ribosomal protein S16
Tax=GWA2_Elusimicrobia_51_34_curated
QC4_scaffold_1996_22
Clostridium sp. CAG:609, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17591..18625)
DNA (1035bp) protein (345aa)
tRNA methylthiotransferase YqeV Tax=Clostridium sp. CAG:609 RepID=R7P5V7_9CLOT
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:CDF20426.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:609.;"
MiaB-like tRNA modifying protein
Displaying 22 items

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