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QH_1_Halobacteriales_64_38

In projects: QH_1  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 38.38 Longest contig: 87.55 Kbp Bin length: 3.78 Mbp GC content: 64.37 %
Contigs count: 202 Features count: 3903 rRNAs count: 1 tRNAs count: 0

Genome completeness

near complete RP 33 / 55 MC: 4 BSCG 28 / 51 MC: 1 ASCG 37 / 38 MC: 1
Displaying items 101-150 of 202 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_1122
Order: Halobacteriales (71.43%)
14 15865 bp 64.47 38.74 80.35
qh_1_scaffold_50
Order: Halobacteriales (60%)
65 48820 bp 63.30 38.73 80.67
qh_1_scaffold_739
Order: Halobacteriales (57.14%)
7 9004 bp 65.16 38.72 89.83
qh_1_scaffold_824
Order: Halobacteriales (66.67%)
9 13781 bp 65.27 38.71 84.77
qh_1_scaffold_3361
Genus: Halococcus (50%)
6 5339 bp 64.04 38.70 86.76
qh_1_scaffold_362
Genus: Halococcus (63.64%)
11 12589 bp 65.18 38.66 95.23
qh_1_scaffold_255
Order: Halobacteriales (60%)
45 47204 bp 65.16 38.61 82.01
qh_1_scaffold_456
Genus: Halococcus (51.85%)
27 29483 bp 63.79 38.60 78.53
qh_1_scaffold_134
Order: Halobacteriales (53.57%)
84 87548 bp 64.15 38.55 82.19
qh_1_scaffold_522
Order: Halobacteriales (54.55%)
22 20319 bp 64.69 38.55 82.39
qh_1_scaffold_747
Class: Halobacteria (81.82%)
11 8937 bp 64.08 38.51 81.74
qh_1_scaffold_126
Order: Halobacteriales (60.71%)
28 32841 bp 62.85 38.48 83.55
qh_1_scaffold_711
Order: Halobacteriales (54.55%)
11 9211 bp 63.74 38.41 88.17
qh_1_scaffold_1279
Genus: Halococcus (50%)
6 6503 bp 65.02 38.38 83.87
qh_1_scaffold_736
Class: Halobacteria (78.95%)
19 19314 bp 65.50 38.37 83.40
qh_1_scaffold_171
Order: Halobacteriales (66.67%)
24 22012 bp 60.78 38.35 67.78
qh_1_scaffold_780
Order: Halobacteriales (60%)
10 9453 bp 65.21 38.19 82.61
qh_1_scaffold_766
Class: Halobacteria (66.67%)
9 10834 bp 64.17 38.07 81.38
qh_1_scaffold_220
Class: Halobacteria (87.1%)
31 31264 bp 65.55 37.93 84.47
qh_1_scaffold_548
Order: Halobacteriales (53.85%)
13 13749 bp 64.67 37.91 81.13
qh_1_scaffold_57
Order: Halobacteriales (60.53%)
38 41662 bp 65.54 37.86 86.10
qh_1_scaffold_5872
Species: Halococcus salifodinae (50%)
4 3745 bp 64.11 37.78 68.89
qh_1_scaffold_3114
Species: Natronococcus occultus (66.67%)
3 3754 bp 63.13 37.77 93.58
qh_1_scaffold_132
Order: Halobacteriales (54.72%)
53 45000 bp 63.63 37.72 84.37
qh_1_scaffold_56
Class: Halobacteria (74.19%)
31 33630 bp 64.59 37.71 85.14
qh_1_scaffold_1836
Order: Haloferacales (50%)
12 8617 bp 58.55 37.68 81.29
qh_1_scaffold_1602
Class: Halobacteria (75%)
12 9888 bp 62.86 37.62 87.80
qh_1_scaffold_573
Class: Halobacteria (100%)
11 10253 bp 63.97 37.61 82.57
qh_1_scaffold_900
Domain: Archaea (93.75%)
16 17205 bp 64.50 37.49 87.85
qh_1_scaffold_298
Order: Halobacteriales (55%)
20 16291 bp 65.65 37.40 78.80
qh_1_scaffold_1049
Class: Halobacteria (62.5%)
8 12037 bp 62.73 37.38 85.54
qh_1_scaffold_400
Order: Halobacteriales (65.38%)
26 25143 bp 65.83 37.35 85.00
qh_1_scaffold_23
Class: Halobacteria (74.19%)
31 34885 bp 63.87 37.28 81.64
qh_1_scaffold_3069
Class: Halobacteria (62.5%)
8 6832 bp 60.41 37.08 74.96
qh_1_scaffold_2325
Class: Halobacteria (75%)
8 5701 bp 61.71 36.98 78.83
qh_1_scaffold_443
Order: Halobacteriales (50%)
24 22162 bp 63.38 36.90 78.70
qh_1_scaffold_466
Class: Halobacteria (86.67%)
15 12467 bp 63.79 36.87 82.30
qh_1_scaffold_1981
Order: Halobacteriales (50%)
10 8831 bp 63.10 36.84 89.04
qh_1_scaffold_620
Genus: Halococcus (55.56%)
9 11564 bp 64.06 36.70 87.01
qh_1_scaffold_1839
Order: Halobacteriales (50%)
6 5162 bp 65.92 36.69 79.10
qh_1_scaffold_167
Order: Halobacteriales (58.06%)
31 40122 bp 64.45 36.62 90.31
qh_1_scaffold_5690
Order: Haloferacales (50%)
6 5037 bp 62.26 36.57 81.18
qh_1_scaffold_216
Order: Halobacteriales (50%)
36 38364 bp 63.66 36.41 81.10
qh_1_scaffold_265
Order: Halobacteriales (64.29%)
14 15021 bp 61.48 36.36 79.63
qh_1_scaffold_289
Class: Halobacteria (72.41%)
29 29223 bp 63.77 36.27 75.10
qh_1_scaffold_450
Class: Halobacteria (69.23%)
13 12522 bp 58.07 36.22 79.16
qh_1_scaffold_311
Genus: Halococcus (61.11%)
18 24157 bp 64.88 36.00 86.17
qh_1_scaffold_460
Order: Halobacteriales (75%)
16 13524 bp 61.82 35.98 73.03
qh_1_scaffold_2017
Order: Halobacteriales (57.14%)
7 8667 bp 64.57 35.98 90.76
qh_1_scaffold_2366
Genus: Halococcus (50%)
4 4433 bp 63.43 35.94 95.69
Displaying items 101-150 of 202 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.