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QH_1_Viridiplantae_55_6

QH_1_Eukaryota_55_6
In projects: QH_1

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 6.08 Longest contig: 4.44 Kbp Bin length: 1.79 Mbp GC content: 54.99 %
Contigs count: 1078 Features count: 1950 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 22 / 55 MC: 6 BSCG 14 / 51 MC: 3 ASCG 11 / 38 MC: 4
Displaying items 501-550 of 1078 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_11635
Species: Coccomyxa subellipsoidea (50%)
2 1655 bp 55.71 6.53 84.83
qh_1_scaffold_12788
Species: Tetraselmis sp. GSL018 (50%)
2 1545 bp 56.12 5.05 78.25
qh_1_scaffold_19009
Species: Eucalyptus grandis (50%)
2 1889 bp 55.11 5.56 91.95
qh_1_scaffold_7248
Species: Tetraselmis sp. GSL018 (50%)
2 2242 bp 52.01 5.26 82.56
qh_1_scaffold_11176
Species: Ostreococcus tauri (50%)
2 2724 bp 51.17 5.80 69.82
qh_1_scaffold_11406
Species: Ostreococcus tauri (50%)
2 1678 bp 54.17 6.38 80.45
qh_1_scaffold_10025
Species: Musa acuminata (50%)
2 1829 bp 54.84 6.83 99.56
qh_1_scaffold_16247
Species: Gossypium arboreum (50%)
2 1307 bp 53.94 6.12 92.04
qh_1_scaffold_12330
Species: Micromonas pusilla (50%)
2 1588 bp 51.95 6.36 100.13
qh_1_scaffold_27946
Species: Micromonas pusilla (100%)
2 1536 bp 56.64 5.14 88.87
qh_1_scaffold_5870
Species: Ostreococcus tauri (50%)
2 2553 bp 54.45 6.50 92.95
qh_1_scaffold_7483
Species: Bathycoccus prasinos (50%)
2 2197 bp 53.16 7.19 38.51
qh_1_scaffold_7022
Species: Coccomyxa subellipsoidea (50%)
2 2932 bp 54.50 6.07 98.84
qh_1_scaffold_21572
Species: Tetraselmis sp. GSL018 (50%)
2 1053 bp 50.14 5.79 92.59
qh_1_scaffold_11643
Species: Micromonas pusilla (50%)
2 1654 bp 56.11 6.29 67.84
qh_1_scaffold_5873
Species: Micromonas sp. RCC299 (50%)
2 2553 bp 53.19 6.11 76.73
qh_1_scaffold_8407
Species: Coccomyxa subellipsoidea (50%)
2 2044 bp 54.65 5.33 65.75
qh_1_scaffold_19479
Species: Selaginella moellendorffii (50%)
2 2624 bp 53.32 6.40 88.15
qh_1_scaffold_7256
Species: Ostreococcus 'lucimarinus' (50%)
2 2693 bp 52.51 6.09 96.14
qh_1_scaffold_11876
Species: Micromonas pusilla (50%)
2 1631 bp 50.83 6.01 67.32
qh_1_scaffold_14871
Species: Chlorella variabilis (50%)
2 1389 bp 50.61 7.13 85.53
qh_1_scaffold_4953
Species: Micromonas sp. RCC299 (50%)
2 2839 bp 54.35 6.09 59.49
qh_1_scaffold_20402
Species: Micromonas pusilla (50%)
2 1823 bp 49.15 5.81 64.67
qh_1_scaffold_10497
Species: Triticum urartu (50%)
2 1773 bp 55.56 4.79 32.83
qh_1_scaffold_10958
Species: Micromonas pusilla (50%)
2 1724 bp 50.12 8.47 73.78
qh_1_scaffold_14644
Species: Helicosporidium sp. ATCC 50920 (50%)
2 1403 bp 58.37 7.56 64.36
qh_1_scaffold_16950
Species: Coccomyxa subellipsoidea (50%)
2 1266 bp 53.87 5.69 77.96
qh_1_scaffold_22458
Species: Tetraselmis sp. GSL018 (50%)
2 1928 bp 52.23 5.34 89.94
qh_1_scaffold_21118
Species: Coccomyxa subellipsoidea (50%)
2 1071 bp 53.87 5.42 97.20
qh_1_scaffold_22941
Species: Volvox carteri (50%)
2 1002 bp 53.99 6.09 93.11
qh_1_scaffold_23699
Species: Micromonas pusilla (50%)
2 1692 bp 55.85 6.68 64.72
qh_1_scaffold_14187
Species: Micromonas sp. RCC299 (50%)
2 1436 bp 55.22 7.38 70.61
qh_1_scaffold_15108
Species: Tetraselmis sp. GSL018 (50%)
2 1374 bp 61.21 5.90 99.35
qh_1_scaffold_18334
Species: Tetraselmis sp. GSL018 (50%)
2 1193 bp 56.24 4.86 75.94
qh_1_scaffold_6342
Species: Monoraphidium neglectum (50%)
2 2442 bp 54.46 6.06 99.88
qh_1_scaffold_12575
Species: Tetraselmis sp. GSL018 (50%)
2 1566 bp 48.47 7.54 61.11
qh_1_scaffold_13497
Species: Bathycoccus prasinos (50%)
2 1487 bp 61.06 5.72 98.86
qh_1_scaffold_14649
Species: Morus notabilis (50%)
2 1403 bp 58.66 5.42 87.46
qh_1_scaffold_18797
Species: Ostreococcus tauri (50%)
2 2015 bp 57.62 6.40 101.98
qh_1_scaffold_22460
Species: Ostreococcus tauri (50%)
2 1756 bp 55.30 5.30 60.82
qh_1_scaffold_17414
Species: Micromonas sp. RCC299 (50%)
2 1241 bp 57.13 6.61 37.71
qh_1_scaffold_7958
Species: Micromonas pusilla (50%)
2 2114 bp 53.45 6.24 50.38
qh_1_scaffold_10502
Species: Brassica napus (50%)
2 1773 bp 50.87 5.41 77.16
qh_1_scaffold_13729
Species: Ostreococcus 'lucimarinus' (50%)
2 1471 bp 55.00 5.91 86.88
qh_1_scaffold_22462
Species: Volvox carteri (50%)
2 1019 bp 55.74 6.28 99.80
qh_1_scaffold_7267
Species: Ostreococcus tauri (50%)
2 2239 bp 56.41 5.63 86.29
qh_1_scaffold_10503
Species: Selaginella moellendorffii (50%)
2 1773 bp 55.27 5.30 93.74
qh_1_scaffold_12116
Species: Ostreococcus tauri (50%)
2 1608 bp 52.49 6.90 70.71
qh_1_scaffold_8650
Species: Bathycoccus prasinos (50%)
2 2009 bp 54.70 5.57 83.33
qh_1_scaffold_15343
Species: Micromonas sp. RCC299 (50%)
2 1359 bp 51.07 6.62 64.46
Displaying items 501-550 of 1078 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.