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QH_1_Viridiplantae_55_6

QH_1_Eukaryota_55_6
In projects: QH_1

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 6.08 Longest contig: 4.44 Kbp Bin length: 1.79 Mbp GC content: 54.99 %
Contigs count: 1078 Features count: 1950 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 22 / 55 MC: 6 BSCG 14 / 51 MC: 3 ASCG 11 / 38 MC: 4
Displaying items 451-500 of 1078 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_30303
Species: Volvox carteri (50%)
2 1499 bp 53.84 6.07 96.86
qh_1_scaffold_6996
Species: Tetraselmis sp. GSL018 (50%)
2 2296 bp 56.23 5.84 81.53
qh_1_scaffold_7687
Species: Musa acuminata (50%)
2 2161 bp 56.50 6.99 94.68
qh_1_scaffold_13920
Species: Micromonas pusilla (50%)
2 1456 bp 55.63 5.01 80.15
qh_1_scaffold_42723
Species: Micromonas sp. RCC299 (50%)
2 1054 bp 54.93 6.74 86.24
qh_1_scaffold_11618
Species: Ostreococcus 'lucimarinus' (50%)
2 1657 bp 53.77 6.70 69.52
qh_1_scaffold_17609
Species: Monoraphidium neglectum (50%)
2 1231 bp 58.81 4.39 97.97
qh_1_scaffold_7691
Species: Erythranthe guttata (50%)
2 2160 bp 61.48 5.93 95.56
qh_1_scaffold_8612
Species: Tetraselmis sp. GSL018 (50%)
2 2014 bp 54.22 6.01 59.14
qh_1_scaffold_12771
Species: Tetraselmis sp. GSL018 (50%)
2 1547 bp 52.10 6.53 89.01
qh_1_scaffold_13923
Species: Selaginella moellendorffii (50%)
2 1456 bp 52.75 6.66 90.45
qh_1_scaffold_19222
Species: Suaeda eltonica (50%)
2 1708 bp 54.04 6.03 90.46
qh_1_scaffold_34441
Species: Auxenochlorella protothecoides (50%)
2 1404 bp 51.42 5.77 94.23
qh_1_scaffold_40908
Species: Tetraselmis sp. GSL018 (50%)
2 1119 bp 57.46 7.51 94.64
qh_1_scaffold_4697
Species: Volvox carteri (50%)
2 2919 bp 49.40 5.34 63.41
qh_1_scaffold_12310
Species: Ostreococcus tauri (50%)
2 1590 bp 55.85 6.42 91.51
qh_1_scaffold_14618
Species: Populus trichocarpa (50%)
2 1405 bp 59.43 6.98 58.72
qh_1_scaffold_8848
Species: Tetraselmis sp. GSL018 (50%)
2 1980 bp 55.25 5.56 68.18
qh_1_scaffold_10471
Species: Tetraselmis sp. GSL018 (50%)
2 1776 bp 59.18 5.07 75.68
qh_1_scaffold_12776
Species: Chlorella variabilis (50%)
2 1546 bp 54.85 5.63 95.28
qh_1_scaffold_20609
Species: Chlorella variabilis (50%)
2 1091 bp 54.45 5.77 81.94
qh_1_scaffold_21091
Species: Brassica napus (50%)
2 1071 bp 58.17 5.60 70.03
qh_1_scaffold_13006
Species: Prunus persica (50%)
2 2259 bp 49.98 5.62 28.69
qh_1_scaffold_13699
Species: Ostreococcus 'lucimarinus' (50%)
2 1473 bp 57.57 5.63 85.74
qh_1_scaffold_15772
Species: Coccomyxa subellipsoidea (50%)
2 1333 bp 52.89 6.53 56.94
qh_1_scaffold_12547
Species: Glycine soja (50%)
2 2225 bp 56.09 5.84 86.56
qh_1_scaffold_17386
Species: Brachypodium distachyon (50%)
2 2271 bp 55.66 5.86 95.64
qh_1_scaffold_22432
Species: Brassica napus (50%)
2 1020 bp 63.43 5.88 84.41
qh_1_scaffold_19691
Species: Tetraselmis sp. GSL018 (50%)
2 1873 bp 51.04 5.66 96.74
qh_1_scaffold_27877
Species: Coccomyxa subellipsoidea (50%)
2 1438 bp 51.60 5.01 80.53
qh_1_scaffold_8621
Species: Arabidopsis thaliana (50%)
2 2013 bp 55.14 5.76 80.48
qh_1_scaffold_17389
Species: Bathycoccus prasinos (50%)
2 1242 bp 62.16 5.48 79.71
qh_1_scaffold_29103
Species: Solanum tuberosum (50%)
2 1370 bp 54.01 5.99 100.29
qh_1_scaffold_30385
Species: Tetraselmis sp. GSL018 (50%)
2 1403 bp 59.87 5.20 87.24
qh_1_scaffold_7931
Species: Ostreococcus tauri (50%)
2 2119 bp 58.33 5.99 95.14
qh_1_scaffold_19001
Species: Glycine max (50%)
2 1162 bp 54.65 6.80 96.82
qh_1_scaffold_4937
Species: Amborella trichopoda (50%)
2 2843 bp 55.86 6.54 97.82
qh_1_scaffold_5398
Species: Tetraselmis sp. GSL018 (100%)
2 2692 bp 57.47 5.98 88.26
qh_1_scaffold_7471
Species: Ostreococcus tauri (50%)
2 2199 bp 51.75 5.50 58.66
qh_1_scaffold_8393
Species: Chlorella variabilis (50%)
2 2046 bp 54.11 5.91 88.71
qh_1_scaffold_9086
Species: Micromonas sp. RCC299 (50%)
2 1949 bp 57.98 5.90 100.05
qh_1_scaffold_16931
Species: Solanum lycopersicum (50%)
2 1267 bp 51.78 7.02 63.93
qh_1_scaffold_6321
Species: Tetraselmis sp. GSL018 (50%)
2 2447 bp 60.07 5.72 70.62
qh_1_scaffold_9548
Species: Micromonas sp. RCC299 (50%)
2 1888 bp 57.89 6.25 89.78
qh_1_scaffold_16471
Species: Monoraphidium neglectum (50%)
2 1293 bp 48.96 6.11 27.38
qh_1_scaffold_7936
Species: Micromonas pusilla (50%)
2 2117 bp 55.22 4.53 69.72
qh_1_scaffold_5401
Species: Ostreococcus tauri (50%)
2 2691 bp 57.56 6.43 73.24
qh_1_scaffold_5632
Species: Prunus persica (50%)
2 2617 bp 56.82 5.81 77.84
qh_1_scaffold_8628
Species: Micromonas sp. RCC299 (50%)
2 2012 bp 59.39 5.02 83.95
qh_1_scaffold_14860
Species: Chlorella variabilis (50%)
2 1390 bp 52.66 6.40 72.52
Displaying items 451-500 of 1078 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.