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QH_1_Viridiplantae_55_6

QH_1_Eukaryota_55_6
In projects: QH_1

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 6.08 Longest contig: 4.44 Kbp Bin length: 1.79 Mbp GC content: 54.99 %
Contigs count: 1078 Features count: 1950 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 22 / 55 MC: 6 BSCG 14 / 51 MC: 3 ASCG 11 / 38 MC: 4
Displaying items 401-450 of 1078 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_8352
Species: Oryza brachyantha (50%)
2 2053 bp 56.79 5.16 87.82
qh_1_scaffold_9274
Species: Micromonas pusilla (50%)
2 1924 bp 52.60 6.24 56.76
qh_1_scaffold_14123
Species: Zea mays (50%)
2 1441 bp 54.96 6.66 63.50
qh_1_scaffold_18501
Species: Micromonas pusilla (50%)
2 1187 bp 56.36 7.08 78.85
qh_1_scaffold_8122
Species: Bathycoccus prasinos (50%)
2 2088 bp 53.07 6.75 86.21
qh_1_scaffold_19195
Species: Helicosporidium sp. ATCC 50920 (50%)
2 1153 bp 55.59 7.63 42.41
qh_1_scaffold_19425
Species: Micromonas pusilla (50%)
2 1142 bp 58.23 6.30 94.31
qh_1_scaffold_22883
Species: Physcomitrella patens (50%)
2 1004 bp 54.98 6.47 96.81
qh_1_scaffold_7896
Species: Ostreococcus tauri (50%)
2 2124 bp 55.51 5.13 82.63
qh_1_scaffold_10440
Species: Brassica rapa (50%)
2 1779 bp 59.36 4.61 72.68
qh_1_scaffold_11131
Species: Tetraselmis sp. GSL018 (50%)
2 1704 bp 57.45 4.40 91.20
qh_1_scaffold_15971
Species: Micromonas sp. RCC299 (50%)
2 1322 bp 53.56 6.35 82.15
qh_1_scaffold_22653
Species: Auxenochlorella protothecoides (50%)
2 1012 bp 57.81 7.02 94.57
qh_1_scaffold_14359
Species: Amborella trichopoda (50%)
2 2399 bp 53.56 6.00 49.15
qh_1_scaffold_25522
Species: Coccomyxa subellipsoidea (50%)
2 1592 bp 52.83 7.29 100.25
qh_1_scaffold_7205
Species: Micromonas pusilla (50%)
2 2252 bp 58.84 6.88 85.26
qh_1_scaffold_12978
Species: Chlorella variabilis (50%)
2 2186 bp 55.40 6.54 64.78
qh_1_scaffold_5363
Species: Theobroma cacao (50%)
2 2705 bp 60.44 5.77 98.48
qh_1_scaffold_31547
Species: Chlamydomonas reinhardtii (50%)
2 1451 bp 58.17 6.82 86.42
qh_1_scaffold_10905
Species: Volvox carteri (50%)
2 1729 bp 56.56 6.54 58.13
qh_1_scaffold_16204
Species: Micromonas sp. RCC299 (50%)
2 1309 bp 57.30 6.34 84.57
qh_1_scaffold_21065
Species: Micromonas sp. RCC299 (50%)
2 1072 bp 52.52 5.60 47.29
qh_1_scaffold_16668
Species: Tetraselmis sp. GSL018 (50%)
2 1282 bp 54.76 6.16 103.90
qh_1_scaffold_7210
Species: Micromonas sp. RCC299 (50%)
2 2251 bp 54.86 5.20 70.10
qh_1_scaffold_11139
Species: Micromonas pusilla (50%)
2 2718 bp 55.59 5.11 90.51
qh_1_scaffold_14596
Species: Ostreococcus tauri (50%)
2 1407 bp 46.84 5.97 49.68
qh_1_scaffold_19434
Species: Micromonas pusilla (50%)
2 2082 bp 51.63 5.48 56.34
qh_1_scaffold_21068
Species: Eucalyptus grandis (50%)
2 1072 bp 52.99 5.88 92.63
qh_1_scaffold_15059
Species: Theobroma cacao (50%)
2 1922 bp 58.32 5.67 83.51
qh_1_scaffold_15751
Species: Micromonas sp. RCC299 (50%)
2 1334 bp 56.67 6.37 95.35
qh_1_scaffold_6524
Species: Helicosporidium sp. ATCC 50920 (50%)
2 2403 bp 55.76 6.33 47.69
qh_1_scaffold_15984
Species: Chlorella variabilis (50%)
2 2116 bp 53.54 5.20 94.14
qh_1_scaffold_15062
Species: Micromonas sp. RCC299 (50%)
2 2563 bp 51.97 6.55 72.10
qh_1_scaffold_9522
Species: Micromonas sp. RCC299 (50%)
2 1891 bp 59.33 6.40 92.17
qh_1_scaffold_10455
Species: Physcomitrella patens (50%)
2 2516 bp 55.52 7.47 99.68
qh_1_scaffold_15063
Species: Micromonas sp. RCC299 (50%)
2 1377 bp 59.91 5.95 101.74
qh_1_scaffold_11839
Species: Ostreococcus tauri (50%)
2 1635 bp 55.96 6.36 91.19
qh_1_scaffold_31618
Species: Ostreococcus tauri (50%)
2 1487 bp 58.84 5.72 66.98
qh_1_scaffold_20133
Species: Tetraselmis sp. GSL018 (100%)
2 1110 bp 49.01 4.77 81.89
qh_1_scaffold_8142
Species: Coffea canephora (50%)
2 2610 bp 52.68 6.74 102.30
qh_1_scaffold_18522
Species: Micromonas sp. RCC299 (50%)
2 1186 bp 52.02 5.65 86.26
qh_1_scaffold_21957
Species: Tetraselmis sp. GSL018 (50%)
2 1038 bp 53.28 5.59 62.43
qh_1_scaffold_21078
Species: Vitis vinifera (50%)
2 1072 bp 57.28 6.53 85.07
qh_1_scaffold_8835
Species: Micromonas sp. RCC299 (100%)
2 2715 bp 56.83 6.19 83.76
qh_1_scaffold_12994
Species: Physcomitrella patens (50%)
2 1530 bp 53.14 5.49 53.53
qh_1_scaffold_5840
Species: Ostreococcus tauri (50%)
2 2560 bp 55.94 5.63 87.54
qh_1_scaffold_15068
Species: Coccomyxa subellipsoidea (50%)
2 1377 bp 58.10 7.04 59.91
qh_1_scaffold_16450
Species: Brassica napus (50%)
2 1294 bp 52.16 5.26 85.32
qh_1_scaffold_12996
Species: Ostreococcus 'lucimarinus' (50%)
2 1529 bp 55.00 7.78 74.56
qh_1_scaffold_19447
Species: Selaginella moellendorffii (50%)
2 1140 bp 49.39 6.14 81.84
Displaying items 401-450 of 1078 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.