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QH_1_Viridiplantae_55_6

QH_1_Eukaryota_55_6
In projects: QH_1

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 6.08 Longest contig: 4.44 Kbp Bin length: 1.79 Mbp GC content: 54.99 %
Contigs count: 1078 Features count: 1950 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 22 / 55 MC: 6 BSCG 14 / 51 MC: 3 ASCG 11 / 38 MC: 4
Displaying items 351-400 of 1078 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_31389
Species: Eucalyptus grandis (50%)
2 1421 bp 49.12 6.62 103.24
qh_1_scaffold_10878
Species: Tetraselmis sp. GSL018 (50%)
2 1731 bp 50.66 5.83 44.37
qh_1_scaffold_19633
Species: Chlorella variabilis (100%)
2 1774 bp 52.03 5.69 103.16
qh_1_scaffold_21036
Species: Micromonas sp. RCC299 (50%)
2 1073 bp 52.75 6.90 75.49
qh_1_scaffold_21499
Species: Micromonas pusilla (50%)
2 1056 bp 54.55 6.34 74.43
qh_1_scaffold_13413
Species: Aegilops tauschii (50%)
2 1493 bp 50.64 5.63 23.91
qh_1_scaffold_13875
Species: Chlamydomonas reinhardtii (50%)
2 1459 bp 54.42 5.83 74.85
qh_1_scaffold_16179
Species: Ostreococcus 'lucimarinus' (50%)
2 1311 bp 58.81 6.10 97.25
qh_1_scaffold_6491
Species: Tetraselmis sp. GSL018 (50%)
2 2410 bp 55.81 6.35 96.97
qh_1_scaffold_6952
Species: Micromonas pusilla (50%)
2 2305 bp 55.27 6.16 81.61
qh_1_scaffold_7412
Species: Ostreococcus 'lucimarinus' (50%)
2 2211 bp 50.11 6.15 32.43
qh_1_scaffold_34129
Species: Chlamydomonas reinhardtii (50%)
2 1311 bp 54.69 6.79 90.16
qh_1_scaffold_8797
Species: Micromonas sp. RCC299 (50%)
2 2633 bp 54.65 5.96 90.58
qh_1_scaffold_18947
Species: Ostreococcus 'lucimarinus' (50%)
2 1165 bp 56.74 5.24 99.91
qh_1_scaffold_19638
Species: Tetraselmis sp. GSL018 (50%)
2 1132 bp 56.54 5.30 77.65
qh_1_scaffold_19178
Species: Bathycoccus prasinos (50%)
2 1154 bp 54.16 5.89 63.17
qh_1_scaffold_11575
Species: Ostreococcus tauri (50%)
2 1661 bp 54.97 6.62 87.06
qh_1_scaffold_13188
Species: Phaseolus vulgaris (50%)
2 1512 bp 55.29 6.02 84.52
qh_1_scaffold_6957
Species: Ostreococcus tauri (50%)
2 2304 bp 51.95 5.38 68.49
qh_1_scaffold_7187
Species: Coffea canephora (50%)
2 2256 bp 55.85 6.29 55.19
qh_1_scaffold_20792
Species: Chlamydomonas reinhardtii (50%)
2 1084 bp 54.61 6.55 92.16
qh_1_scaffold_14341
Species: Tetraselmis sp. GSL018 (50%)
2 1427 bp 54.52 6.31 91.24
qh_1_scaffold_28796
Species: Micromonas pusilla (50%)
2 1352 bp 52.14 6.80 82.54
qh_1_scaffold_9954
Species: Eucalyptus grandis (50%)
2 2625 bp 51.66 5.68 92.46
qh_1_scaffold_18490
Species: Erythranthe guttata (50%)
2 2238 bp 54.47 5.99 88.87
qh_1_scaffold_8110
Species: Setaria italica (50%)
2 2090 bp 54.21 6.60 89.71
qh_1_scaffold_13421
Species: Capsella rubella (50%)
2 2013 bp 55.34 5.76 95.08
qh_1_scaffold_8111
Species: Arabidopsis lyrata (50%)
2 2090 bp 54.88 6.08 66.17
qh_1_scaffold_18722
Species: Bathycoccus prasinos (50%)
2 1176 bp 57.99 5.44 63.78
qh_1_scaffold_5117
Species: Volvox carteri (50%)
2 2785 bp 53.90 5.96 54.18
qh_1_scaffold_21048
Species: Tetraselmis sp. GSL018 (50%)
2 1073 bp 58.15 6.52 59.55
qh_1_scaffold_12964
Species: Zea mays (50%)
2 1531 bp 56.30 5.75 79.16
qh_1_scaffold_15268
Species: Araucaria cunninghamii (50%)
2 1364 bp 64.08 6.60 95.45
qh_1_scaffold_12042
Species: Chlorella variabilis (50%)
2 1614 bp 54.34 5.45 40.71
qh_1_scaffold_21511
Species: Coccomyxa subellipsoidea (50%)
2 1055 bp 57.16 6.54 94.98
qh_1_scaffold_19879
Species: Ostreococcus tauri (50%)
2 1121 bp 61.55 5.44 94.74
qh_1_scaffold_20820
Species: Physcomitrella patens (50%)
2 1083 bp 58.26 5.72 96.12
qh_1_scaffold_23370
Species: Wollemia nobilis (50%)
2 1672 bp 54.61 6.58 84.51
qh_1_scaffold_9960
Species: Micromonas pusilla (50%)
2 1836 bp 59.20 5.17 49.84
qh_1_scaffold_15270
Species: Selaginella moellendorffii (50%)
2 1364 bp 58.14 6.52 96.55
qh_1_scaffold_28835
Species: Micromonas sp. RCC299 (50%)
2 1416 bp 54.73 5.37 100.21
qh_1_scaffold_18959
Species: Gossypium raimondii (50%)
2 1909 bp 58.67 5.66 56.73
qh_1_scaffold_22393
Species: Physcomitrella patens (50%)
2 1022 bp 59.78 4.21 52.54
qh_1_scaffold_27694
Species: Ostreococcus tauri (50%)
2 1361 bp 57.83 6.02 72.30
qh_1_scaffold_11125
Species: Volvox carteri (50%)
2 1705 bp 54.37 6.16 93.43
qh_1_scaffold_11587
Species: Micromonas sp. RCC299 (50%)
2 1660 bp 63.67 5.06 93.07
qh_1_scaffold_22164
Species: Bathycoccus prasinos (50%)
2 1030 bp 54.76 5.73 51.84
qh_1_scaffold_12049
Species: Micromonas pusilla (50%)
2 1613 bp 58.15 7.69 96.90
qh_1_scaffold_22649
Species: Solanum lycopersicum (50%)
2 1013 bp 49.95 5.23 89.14
qh_1_scaffold_30151
Species: Tetraselmis sp. GSL018 (50%)
2 1199 bp 61.30 5.92 71.31
Displaying items 351-400 of 1078 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.