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QH_1_Viridiplantae_55_6

QH_1_Eukaryota_55_6
In projects: QH_1

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 6.08 Longest contig: 4.44 Kbp Bin length: 1.79 Mbp GC content: 54.99 %
Contigs count: 1078 Features count: 1950 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 22 / 55 MC: 6 BSCG 14 / 51 MC: 3 ASCG 11 / 38 MC: 4
Displaying items 301-350 of 1078 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_9233
Species: Micromonas sp. RCC299 (50%)
2 1929 bp 55.11 6.58 60.96
qh_1_scaffold_12009
Species: Micromonas sp. RCC299 (50%)
2 1618 bp 58.16 6.00 86.96
qh_1_scaffold_12700
Species: Physcomitrella patens (50%)
2 1554 bp 60.55 5.47 78.57
qh_1_scaffold_15697
Species: Tetraselmis sp. GSL018 (50%)
2 1337 bp 54.53 4.86 85.94
qh_1_scaffold_20534
Species: Volvox carteri (50%)
2 1093 bp 57.91 6.86 76.03
qh_1_scaffold_8774
Species: Musa acuminata (50%)
2 1991 bp 50.88 6.63 95.68
qh_1_scaffold_12471
Species: Coccomyxa subellipsoidea (50%)
2 1576 bp 53.55 6.66 76.90
qh_1_scaffold_15698
Species: Tetraselmis sp. GSL018 (50%)
2 1337 bp 63.87 5.76 94.24
qh_1_scaffold_22126
Species: Ostreococcus 'lucimarinus' (50%)
2 1031 bp 56.06 6.21 60.81
qh_1_scaffold_17541
Species: Micromonas sp. RCC299 (50%)
2 1234 bp 57.21 6.48 68.56
qh_1_scaffold_18463
Species: Chlorella variabilis (50%)
2 1188 bp 55.89 7.15 88.64
qh_1_scaffold_4629
Species: Phaseolus vulgaris (50%)
2 2950 bp 56.85 6.03 96.61
qh_1_scaffold_13625
Species: Ostreococcus 'lucimarinus' (50%)
2 1478 bp 58.46 5.95 74.70
qh_1_scaffold_15469
Species: Erythranthe guttata (50%)
2 1351 bp 58.25 6.44 77.28
qh_1_scaffold_46292
Species: Coccomyxa subellipsoidea (50%)
2 1078 bp 52.13 7.24 88.22
qh_1_scaffold_12704
Species: Setaria italica (50%)
2 1553 bp 57.57 4.70 94.08
qh_1_scaffold_12935
Species: Selaginella moellendorffii (50%)
2 2940 bp 51.02 5.75 98.37
qh_1_scaffold_11785
Species: Coffea canephora (50%)
2 1641 bp 60.15 6.15 53.75
qh_1_scaffold_22130
Species: Theobroma cacao (50%)
2 1031 bp 52.28 6.40 74.78
qh_1_scaffold_9470
Species: Coccomyxa subellipsoidea (50%)
2 1898 bp 57.11 6.27 60.70
qh_1_scaffold_12477
Species: Triticum aestivum (50%)
2 2160 bp 53.89 6.99 68.47
qh_1_scaffold_24314
Species: Tetraselmis sp. GSL018 (100%)
2 1589 bp 59.22 6.48 98.74
qh_1_scaffold_5095
Species: Bathycoccus prasinos (50%)
2 2792 bp 53.04 4.91 97.46
qh_1_scaffold_10636
Species: Ostreococcus tauri (50%)
2 1759 bp 54.41 7.05 94.14
qh_1_scaffold_19161
Species: Chlamydomonas reinhardtii (50%)
2 2014 bp 60.68 5.56 98.16
qh_1_scaffold_20543
Species: Amborella trichopoda (50%)
2 1093 bp 56.82 4.48 100.46
qh_1_scaffold_9474
Species: Populus tremula x Populus alba (50%)
2 1898 bp 58.64 6.27 86.78
qh_1_scaffold_13863
Species: Ostreococcus tauri (50%)
2 1460 bp 55.00 7.33 94.73
qh_1_scaffold_15245
Species: Chlamydomonas reinhardtii (50%)
2 1365 bp 54.21 6.37 48.57
qh_1_scaffold_16859
Species: Triticum aestivum (50%)
2 1272 bp 57.70 5.50 82.78
qh_1_scaffold_20775
Species: Chlorella variabilis (50%)
2 1085 bp 52.44 5.90 100.09
qh_1_scaffold_22135
Species: Coccomyxa subellipsoidea (50%)
2 1031 bp 52.57 4.46 75.36
qh_1_scaffold_6940
Species: Phaseolus vulgaris (50%)
2 2307 bp 56.61 5.46 62.94
qh_1_scaffold_18241
Species: Coccomyxa subellipsoidea (50%)
2 1198 bp 51.84 6.76 75.88
qh_1_scaffold_22850
Species: Micromonas sp. RCC299 (50%)
2 1005 bp 55.22 5.47 97.91
qh_1_scaffold_37093
Species: Erythranthe guttata (50%)
2 1229 bp 51.34 5.29 84.46
qh_1_scaffold_9706
Species: Amborella trichopoda (50%)
2 1868 bp 54.93 6.42 95.40
qh_1_scaffold_14556
Species: Ostreococcus tauri (50%)
2 1409 bp 55.43 5.96 101.99
qh_1_scaffold_9247
Species: Micromonas sp. RCC299 (50%)
2 1927 bp 56.77 5.45 66.63
qh_1_scaffold_14097
Species: Monoraphidium neglectum (50%)
2 1443 bp 57.87 7.07 100.21
qh_1_scaffold_14558
Species: Micromonas sp. RCC299 (50%)
2 1409 bp 52.95 5.18 63.88
qh_1_scaffold_22853
Species: Helicosporidium sp. ATCC 50920 (50%)
2 1760 bp 55.57 6.65 81.65
qh_1_scaffold_12715
Species: Bathycoccus prasinos (50%)
2 1552 bp 60.05 5.73 101.29
qh_1_scaffold_17323
Species: Micromonas pusilla (50%)
2 1245 bp 55.66 4.58 79.04
qh_1_scaffold_18707
Species: Jatropha curcas (50%)
2 1177 bp 54.72 6.20 71.37
qh_1_scaffold_5563
Species: Coccomyxa subellipsoidea (50%)
2 2640 bp 54.36 7.08 95.11
qh_1_scaffold_19860
Species: Brachypodium distachyon (50%)
2 1122 bp 57.49 5.88 94.38
qh_1_scaffold_22373
Species: Micromonas pusilla (50%)
2 1023 bp 57.77 6.55 80.65
qh_1_scaffold_5565
Species: Oryza rufipogon (50%)
2 2638 bp 55.34 5.65 50.61
qh_1_scaffold_13872
Species: Tetraselmis sp. GSL018 (50%)
2 1460 bp 53.22 7.53 76.03
Displaying items 301-350 of 1078 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.