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QH_10_Halobacteria_71_24

In projects: QH_10  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QH_10_UNK

Properties

Avg. coverage: 24.45 Longest contig: 12.79 Kbp Bin length: 718.42 Kbp GC content: 71.07 %
Contigs count: 147 Features count: 787 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 23 / 55 MC: 3 BSCG 21 / 51 MC: 1 ASCG 21 / 38 MC: 1
Displaying items 51-100 of 147 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_10_scaffold_9707
Order: Halobacteriales (50%)
6 6351 bp 72.07 24.67 74.49
qh_10_scaffold_15078
Class: Halobacteria (66.67%)
6 4417 bp 72.42 24.88 92.51
qh_10_scaffold_15966
Class: Halobacteria (66.67%)
6 4672 bp 71.34 28.47 73.33
qh_10_scaffold_2448
Class: Halobacteria (66.67%)
6 4970 bp 72.86 21.91 84.39
qh_10_scaffold_5917
Class: Halobacteria (80%)
5 3148 bp 67.85 29.67 88.34
qh_10_scaffold_5210
Order: Natrialbales (80%)
5 3383 bp 72.45 29.80 92.67
qh_10_scaffold_6301
Order: Halobacteriales (60%)
5 4644 bp 72.89 24.04 78.55
qh_10_scaffold_7696
Order: Natrialbales (60%)
5 4230 bp 70.05 22.54 83.40
qh_10_scaffold_5957
Order: Halobacteriales (60%)
5 5736 bp 72.70 27.91 87.97
qh_10_scaffold_6189
Class: Halobacteria (100%)
5 6021 bp 71.27 24.88 86.60
qh_10_scaffold_11740
Order: Halobacteriales (80%)
5 3645 bp 72.76 23.95 71.85
qh_10_scaffold_7737
Class: Halobacteria (80%)
5 5836 bp 71.59 26.88 88.78
qh_10_scaffold_20344
Order: Halobacteriales (60%)
5 3351 bp 69.83 16.89 87.20
qh_10_scaffold_3806
Order: Natrialbales (60%)
5 4967 bp 74.97 25.63 93.01
qh_10_scaffold_8327
Class: Halobacteria (80%)
5 4412 bp 71.01 25.78 87.04
qh_10_scaffold_10099
Class: Halobacteria (80%)
5 3610 bp 69.28 25.35 74.38
qh_10_scaffold_12825
Order: Halobacteriales (60%)
5 4934 bp 69.19 28.82 91.75
qh_10_scaffold_8354
Class: Halobacteria (60%)
5 4533 bp 69.20 22.44 91.20
qh_10_scaffold_8363
Order: Natrialbales (60%)
5 4340 bp 68.92 31.73 90.83
qh_10_scaffold_8012
Order: Natrialbales (60%)
5 4483 bp 67.83 22.11 89.87
qh_10_scaffold_16633
Order: Natrialbales (60%)
5 3192 bp 69.24 17.61 95.58
qh_10_scaffold_9454
Order: Halobacteriales (60%)
5 3778 bp 68.05 22.53 72.66
qh_10_scaffold_8855
Class: Halobacteria (80%)
5 3433 bp 68.63 28.72 92.37
qh_10_scaffold_9001
Class: Halobacteria (100%)
5 4289 bp 66.78 28.30 77.29
qh_10_scaffold_9931
Class: Halobacteria (80%)
5 4446 bp 71.64 25.24 77.67
qh_10_scaffold_6439
Order: Natrialbales (60%)
5 5082 bp 74.18 22.43 90.85
qh_10_scaffold_12886
Order: Halobacteriales (60%)
5 3800 bp 72.08 24.55 77.45
qh_10_scaffold_9474
Class: Halobacteria (80%)
5 3180 bp 72.45 22.36 95.38
qh_10_scaffold_2553
Order: Natrialbales (80%)
5 10526 bp 68.40 31.90 83.74
qh_10_scaffold_4142
Class: Halobacteria (100%)
5 5238 bp 72.57 22.87 73.88
qh_10_scaffold_8670
Order: Halobacteriales (80%)
5 3970 bp 72.77 23.51 93.48
qh_10_scaffold_8672
Order: Natrialbales (60%)
5 4312 bp 70.85 21.75 59.07
qh_10_scaffold_9281
Order: Natrialbales (60%)
5 3139 bp 69.77 24.34 100.16
qh_10_scaffold_5002
Order: Halobacteriales (75%)
4 3460 bp 68.03 27.89 88.87
qh_10_scaffold_6148
Order: Natrialbales (50%)
4 3074 bp 71.34 24.59 94.47
qh_10_scaffold_5690
Species: Halosimplex carlsbadense (50%)
4 3625 bp 74.23 20.39 75.89
qh_10_scaffold_15566
Class: Halobacteria (50%)
4 3844 bp 70.94 28.21 89.83
qh_10_scaffold_22263
Class: Halobacteria (50%)
4 4456 bp 72.64 23.27 87.79
qh_10_scaffold_7455
Order: Natrialbales (75%)
4 4495 bp 71.26 21.62 81.96
qh_10_scaffold_8733
Species: Haloterrigena salina (50%)
4 7559 bp 72.26 20.89 82.15
qh_10_scaffold_3078
Order: Natrialbales (75%)
4 4930 bp 70.47 28.78 80.57
qh_10_scaffold_6313
Order: Halobacteriales (50%)
4 4225 bp 71.29 25.47 95.08
qh_10_scaffold_14501
Order: Halobacteriales (50%)
4 3926 bp 70.81 24.30 90.47
qh_10_scaffold_9830
Order: Haloferacales (50%)
4 4948 bp 74.41 21.58 57.48
qh_10_scaffold_5980
Order: Halobacteriales (50%)
4 3128 bp 73.72 23.63 93.89
qh_10_scaffold_16081
Order: Halobacteriales (50%)
4 3612 bp 70.96 22.09 72.34
qh_10_scaffold_6804
Species: halophilic archaeon DL31 (50%)
4 4216 bp 70.45 23.37 90.73
qh_10_scaffold_12378
Order: Halobacteriales (50%)
4 4840 bp 72.27 22.56 90.68
qh_10_scaffold_11921
Order: Natrialbales (50%)
4 3375 bp 69.45 19.70 87.38
qh_10_scaffold_10321
Species: Halogranum salarium (50%)
4 3830 bp 72.98 25.12 99.63
Displaying items 51-100 of 147 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.