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QH_10_UNK

In projects: QH_10

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 20.81 Longest contig: 99.48 Kbp Bin length: 62.59 Mbp GC content: 61.29 %
Contigs count: 23910 Features count: 79125 rRNAs count: 20 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 52 BSCG 49 / 51 MC: 47 ASCG 38 / 38 MC: 38
Displaying items 1-50 of 23910 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
qh_10_scaffold_4 147 99477 bp 41.64 13.24 82.93
qh_10_scaffold_61 104 81568 bp 53.31 13.72 89.48
qh_10_scaffold_2 103 67277 bp 40.77 41.13 84.20
qh_10_scaffold_1 84 94119 bp 35.83 12.98 95.32
qh_10_scaffold_271 80 53811 bp 58.97 13.48 91.16
qh_10_scaffold_334 79 39347 bp 44.86 18.83 86.81
qh_10_scaffold_3 78 60455 bp 56.35 18.90 78.16
qh_10_scaffold_55 73 48497 bp 59.43 22.59 92.18
qh_10_scaffold_117 68 44273 bp 46.45 9.11 91.27
qh_10_scaffold_146 66 56859 bp 45.25 18.19 94.44
qh_10_scaffold_219 59 35781 bp 44.69 8.81 82.18
qh_10_scaffold_331 59 40507 bp 66.01 12.82 89.02
qh_10_scaffold_659 52 44433 bp 41.30 42.36 86.15
qh_10_scaffold_135 50 49063 bp 47.21 13.09 90.39
qh_10_scaffold_77
Class: Halobacteria (64.58%)
48 49067 bp 60.29 16.11 90.66
qh_10_scaffold_478
Species: Halosimplex carlsbadense (50%)
48 46600 bp 60.14 14.48 73.98
qh_10_scaffold_29 47 60090 bp 37.13 12.69 95.93
qh_10_scaffold_20
Species: Salinibacter ruber (93.33%)
45 43913 bp 64.01 31.37 88.57
qh_10_scaffold_6
Domain: Bacteria (95.45%)
44 54022 bp 63.14 31.63 85.25
qh_10_scaffold_813
Order: Halobacteriales (50%)
42 36648 bp 69.45 17.03 81.37
qh_10_scaffold_21 41 40146 bp 63.41 22.66 91.76
qh_10_scaffold_181
Class: Halobacteria (57.5%)
40 46620 bp 58.01 13.64 84.12
qh_10_scaffold_109
Class: Halobacteria (65%)
40 34203 bp 55.47 11.89 86.14
qh_10_scaffold_85
Class: Halobacteria (89.74%)
39 41799 bp 57.86 14.49 90.33
qh_10_scaffold_536 39 23639 bp 63.31 10.75 84.48
qh_10_scaffold_91 37 32456 bp 44.87 16.62 88.54
qh_10_scaffold_595
Domain: Bacteria (54.05%)
37 29688 bp 61.71 10.45 63.13
qh_10_scaffold_37
Class: Halobacteria (70.27%)
37 36731 bp 55.42 20.70 90.68
qh_10_scaffold_259
Class: Halobacteria (74.29%)
35 38568 bp 63.48 21.04 84.68
qh_10_scaffold_90
Class: Halobacteria (74.29%)
35 33456 bp 61.43 11.78 79.75
qh_10_scaffold_1553 35 20277 bp 43.77 20.83 88.56
qh_10_scaffold_15
Class: Halobacteria (58.82%)
34 36206 bp 60.24 16.70 88.66
qh_10_scaffold_320
Class: Halobacteria (93.94%)
33 28534 bp 67.24 21.34 85.89
qh_10_scaffold_224 33 27468 bp 39.77 84.03 75.90
qh_10_scaffold_140
Class: Halobacteria (56.25%)
32 30127 bp 62.25 11.96 85.48
qh_10_scaffold_40 32 29238 bp 65.03 18.87 93.55
qh_10_scaffold_365
Domain: Bacteria (80.65%)
31 32696 bp 57.69 21.26 83.56
qh_10_scaffold_156
Domain: Bacteria (67.74%)
31 29708 bp 49.94 13.31 88.79
qh_10_scaffold_202 31 24550 bp 36.07 12.83 83.50
qh_10_scaffold_195 31 14894 bp 43.95 18.46 89.27
qh_10_scaffold_435
Domain: Bacteria (60%)
30 26977 bp 59.48 25.21 81.67
qh_10_scaffold_1820
Class: Halobacteria (83.33%)
30 21951 bp 66.29 12.12 86.35
qh_10_scaffold_610
Class: Halobacteria (80%)
30 31459 bp 62.78 16.05 78.12
qh_10_scaffold_1000
Genus: Natronomonas (72.41%)
29 25873 bp 68.51 23.25 90.02
qh_10_scaffold_191 29 15002 bp 67.78 33.13 93.27
qh_10_scaffold_38
Species: Halosimplex carlsbadense (65.52%)
29 28656 bp 69.94 23.04 89.92
qh_10_scaffold_28
Phylum: Cyanobacteria (96.43%)
28 31605 bp 48.12 25.32 80.02
qh_10_scaffold_74 28 32262 bp 45.34 18.59 95.28
qh_10_scaffold_170
Class: Halobacteria (88.89%)
27 20019 bp 60.72 10.97 82.09
qh_10_scaffold_554
Order: Halobacteriales (77.78%)
27 30878 bp 64.50 18.62 85.92
Displaying items 1-50 of 23910 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.