ggKbase home page
Advanced Search
Search Help

QH_10_Halobacteria_71_24

In projects: QH_10  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QH_10_UNK

Properties

Avg. coverage: 24.45 Longest contig: 12.79 Kbp Bin length: 718.42 Kbp GC content: 71.07 %
Contigs count: 147 Features count: 787 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 23 / 55 MC: 3 BSCG 21 / 51 MC: 1 ASCG 21 / 38 MC: 1
Displaying items 51-100 of 147 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_10_scaffold_4734
Class: Halobacteria (88.89%)
9 7905 bp 71.16 23.54 85.09
qh_10_scaffold_1976
Order: Halobacteriales (50%)
10 5501 bp 69.50 24.65 85.13
qh_10_scaffold_7389
Order: Halobacteriales (50%)
4 3137 bp 76.57 23.33 85.21
qh_10_scaffold_1936
Order: Natrialbales (50%)
12 9490 bp 72.01 25.88 85.29
qh_10_scaffold_4334
Class: Halobacteria (85.71%)
7 5016 bp 73.35 20.65 85.65
qh_10_scaffold_18421
Order: Haloferacales (66.67%)
3 3450 bp 72.14 20.26 86.00
qh_10_scaffold_3810
Order: Halobacteriales (50%)
8 7049 bp 70.85 22.36 86.01
qh_10_scaffold_8520
Order: Natrialbales (66.67%)
3 4072 bp 70.21 23.67 86.42
qh_10_scaffold_6189
Class: Halobacteria (100%)
5 6021 bp 71.27 24.88 86.60
qh_10_scaffold_3726
Class: Halobacteria (100%)
7 4889 bp 68.54 27.35 86.70
qh_10_scaffold_8327
Class: Halobacteria (80%)
5 4412 bp 71.01 25.78 87.04
qh_10_scaffold_8070
Order: Halobacteriales (60%)
10 6827 bp 69.23 23.67 87.05
qh_10_scaffold_20344
Order: Halobacteriales (60%)
5 3351 bp 69.83 16.89 87.20
qh_10_scaffold_4996
Order: Natrialbales (50%)
6 3461 bp 69.69 21.32 87.29
qh_10_scaffold_11921
Order: Natrialbales (50%)
4 3375 bp 69.45 19.70 87.38
qh_10_scaffold_21496
Order: Halobacteriales (100%)
4 3820 bp 71.73 26.65 87.49
qh_10_scaffold_22263
Class: Halobacteria (50%)
4 4456 bp 72.64 23.27 87.79
qh_10_scaffold_8882
Class: Halobacteria (71.43%)
7 8145 bp 71.59 23.87 87.96
qh_10_scaffold_5957
Order: Halobacteriales (60%)
5 5736 bp 72.70 27.91 87.97
qh_10_scaffold_14365
Order: Natrialbales (57.14%)
7 4953 bp 70.36 21.85 88.07
qh_10_scaffold_5896
Species: Haladaptatus paucihalophilus (50%)
4 3157 bp 71.43 19.73 88.09
qh_10_scaffold_5389
Species: Halorhabdus utahensis (50%)
2 3325 bp 72.36 23.91 88.15
qh_10_scaffold_8061
Species: Halogeometricum borinquense (50%)
2 3052 bp 70.02 27.72 88.17
qh_10_scaffold_8752
Order: Natrialbales (50%)
10 5345 bp 69.84 21.14 88.18
qh_10_scaffold_5917
Class: Halobacteria (80%)
5 3148 bp 67.85 29.67 88.34
qh_10_scaffold_7737
Class: Halobacteria (80%)
5 5836 bp 71.59 26.88 88.78
qh_10_scaffold_6042
Class: Halobacteria (50%)
4 3110 bp 73.79 25.14 88.84
qh_10_scaffold_5002
Order: Halobacteriales (75%)
4 3460 bp 68.03 27.89 88.87
qh_10_scaffold_13925
Domain: Archaea (66.67%)
3 3288 bp 71.17 26.79 88.96
qh_10_scaffold_2678
Class: Halobacteria (50%)
10 5809 bp 69.84 23.67 88.98
qh_10_scaffold_4928
Order: Halobacteriales (63.64%)
11 10007 bp 72.54 26.06 89.01
qh_10_scaffold_3433
Order: Halobacteriales (50%)
4 4224 bp 72.37 21.71 89.20
qh_10_scaffold_3624
Order: Halobacteriales (71.43%)
7 5962 bp 71.08 24.12 89.22
qh_10_scaffold_21076
Domain: Archaea (57.14%)
7 5309 bp 68.66 22.15 89.23
qh_10_scaffold_1870
Class: Halobacteria (80%)
10 12787 bp 70.20 27.58 89.46
qh_10_scaffold_3804
Class: Halobacteria (73.33%)
15 10959 bp 70.88 27.69 89.46
qh_10_scaffold_15566
Class: Halobacteria (50%)
4 3844 bp 70.94 28.21 89.83
qh_10_scaffold_8012
Order: Natrialbales (60%)
5 4483 bp 67.83 22.11 89.87
qh_10_scaffold_15343
Order: Halobacteriales (50%)
4 3004 bp 71.90 23.97 89.88
qh_10_scaffold_6857
Order: Natrialbales (75%)
4 4382 bp 71.79 25.01 90.03
qh_10_scaffold_22921
Class: Halobacteria (71.43%)
7 4660 bp 71.27 26.27 90.13
qh_10_scaffold_903
Class: Halobacteria (55.56%)
9 9314 bp 68.52 23.34 90.19
qh_10_scaffold_14501
Order: Halobacteriales (50%)
4 3926 bp 70.81 24.30 90.47
qh_10_scaffold_12378
Order: Halobacteriales (50%)
4 4840 bp 72.27 22.56 90.68
qh_10_scaffold_6804
Species: halophilic archaeon DL31 (50%)
4 4216 bp 70.45 23.37 90.73
qh_10_scaffold_7983
Class: Halobacteria (100%)
3 3136 bp 71.05 20.38 90.78
qh_10_scaffold_9542
Class: Halobacteria (83.33%)
6 4474 bp 71.05 29.86 90.79
qh_10_scaffold_8363
Order: Natrialbales (60%)
5 4340 bp 68.92 31.73 90.83
qh_10_scaffold_6439
Order: Natrialbales (60%)
5 5082 bp 74.18 22.43 90.85
qh_10_scaffold_13339
Species: Haloferax larsenii (50%)
2 3058 bp 70.73 22.69 91.04
Displaying items 51-100 of 147 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.