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QH_10_Viridiplantae_55_7

QH_10_Eukaryota_55_7
In projects: QH_10

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QH_10_UNK

Properties

Avg. coverage: 7.38 Longest contig: 23.04 Kbp Bin length: 2.91 Mbp GC content: 55.23 %
Contigs count: 970 Features count: 2754 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 26 / 55 MC: 11 BSCG 22 / 51 MC: 5 ASCG 14 / 38 MC: 5
Displaying items 201-250 of 970 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
qh_10_scaffold_6006
Domain: Viridiplantae (50%)
4 3122 bp 55.83 6.63 71.78
qh_10_scaffold_13806
Species: Bathycoccus prasinos (50%)
4 1810 bp 61.44 6.85 94.14
qh_10_scaffold_5087
Phylum: Streptophyta (50%)
4 3429 bp 54.16 7.00 70.78
qh_10_scaffold_19857
Phylum: Chlorophyta (50%)
4 2266 bp 54.68 6.80 85.66
qh_10_scaffold_9404
Domain: Viridiplantae (50%)
4 4466 bp 54.19 6.70 90.15
qh_10_scaffold_7529
Phylum: Chlorophyta (50%)
4 3850 bp 56.65 7.22 69.51
qh_10_scaffold_6017
Phylum: Chlorophyta (50%)
4 3119 bp 56.11 7.15 83.20
qh_10_scaffold_15241
Phylum: Streptophyta (50%)
4 2280 bp 56.23 7.24 95.92
qh_10_scaffold_5790
Phylum: Chlorophyta (50%)
4 3189 bp 53.62 8.31 52.87
qh_10_scaffold_25461
Phylum: Chlorophyta (50%)
4 1695 bp 59.94 8.02 70.09
qh_10_scaffold_4902
Domain: Viridiplantae (50%)
4 5095 bp 55.86 7.67 72.42
qh_10_scaffold_1544
Phylum: Streptophyta (50%)
4 6127 bp 52.15 7.43 45.63
qh_10_scaffold_3824
Phylum: Chlorophyta (50%)
4 4645 bp 55.78 7.60 97.33
qh_10_scaffold_11337
Phylum: Chlorophyta (50%)
4 3841 bp 55.27 7.19 71.86
qh_10_scaffold_6854
Phylum: Chlorophyta (50%)
4 2891 bp 54.48 7.68 59.67
qh_10_scaffold_10121
Phylum: Chlorophyta (50%)
4 3509 bp 50.81 5.90 86.78
qh_10_scaffold_4382
Phylum: Chlorophyta (50%)
4 3727 bp 57.42 6.87 91.44
qh_10_scaffold_15676
Domain: Viridiplantae (50%)
4 3089 bp 55.94 8.19 63.61
qh_10_scaffold_23653
Phylum: Streptophyta (50%)
4 2064 bp 53.49 6.35 84.01
qh_10_scaffold_7781
Phylum: Chlorophyta (50%)
4 2664 bp 56.57 9.27 91.10
qh_10_scaffold_11970
Phylum: Chlorophyta (50%)
4 3591 bp 56.78 6.60 73.35
qh_10_scaffold_11120
Species: Araucaria cunninghamii (50%)
4 3700 bp 56.03 8.35 96.73
qh_10_scaffold_10598
Phylum: Streptophyta (75%)
4 3308 bp 59.28 7.29 91.96
qh_10_scaffold_4393
Order: Poales (50%)
4 3721 bp 54.93 6.69 71.03
qh_10_scaffold_8145
Phylum: Chlorophyta (50%)
4 2590 bp 54.86 7.88 82.70
qh_10_scaffold_4398
Order: Brassicales (50%)
4 5663 bp 55.89 6.76 78.46
qh_10_scaffold_18488
Domain: Viridiplantae (50%)
4 1461 bp 56.88 6.30 77.21
qh_10_scaffold_8389
Order: Mamiellales (50%)
4 3023 bp 51.84 7.28 95.96
qh_10_scaffold_3722
Domain: Viridiplantae (50%)
4 6288 bp 55.30 7.52 91.94
qh_10_scaffold_4402
Order: Mamiellales (50%)
4 3715 bp 58.33 7.62 59.76
qh_10_scaffold_4403
Phylum: Streptophyta (75%)
4 3715 bp 55.15 8.13 76.15
qh_10_scaffold_6657
Species: Micromonas sp. RCC299 (50%)
4 3972 bp 54.15 7.53 71.45
qh_10_scaffold_14323
Species: Ostreococcus 'lucimarinus' (50%)
4 4774 bp 54.23 6.70 87.29
qh_10_scaffold_3034
Class: rosids (50%)
4 6610 bp 54.74 7.29 93.59
qh_10_scaffold_4560
Phylum: Chlorophyta (50%)
4 4556 bp 57.88 7.05 75.20
qh_10_scaffold_2945
Domain: Viridiplantae (50%)
4 4546 bp 52.55 7.44 59.66
qh_10_scaffold_3517
Domain: Viridiplantae (50%)
4 4176 bp 56.82 8.26 80.75
qh_10_scaffold_18962
Order: Mamiellales (50%)
4 2273 bp 59.08 7.44 99.38
qh_10_scaffold_31300
Phylum: Chlorophyta (50%)
4 1884 bp 52.18 7.06 78.98
qh_10_scaffold_3612
Phylum: Streptophyta (50%)
4 4716 bp 58.69 6.74 93.64
qh_10_scaffold_10625
Order: Mamiellales (50%)
4 3225 bp 53.52 6.33 77.49
qh_10_scaffold_2240
Domain: Viridiplantae (50%)
4 5192 bp 57.86 7.59 89.10
qh_10_scaffold_2575
Phylum: Streptophyta (50%)
4 6243 bp 54.94 7.50 67.80
qh_10_scaffold_5390
Class: Trebouxiophyceae (50%)
4 3325 bp 57.05 6.98 91.13
qh_10_scaffold_3615
Phylum: Streptophyta (50%)
4 4126 bp 53.78 7.10 96.27
qh_10_scaffold_14628
Phylum: Chlorophyta (50%)
4 2433 bp 59.72 8.38 74.72
qh_10_scaffold_4423
Phylum: Chlorophyta (50%)
4 3706 bp 55.67 8.34 91.39
qh_10_scaffold_5876
Phylum: Chlorophyta (50%)
4 4859 bp 55.77 6.83 90.27
qh_10_scaffold_9498
Order: Mamiellales (50%)
4 4261 bp 56.51 7.02 72.38
qh_10_scaffold_10429
Phylum: Streptophyta (50%)
4 3713 bp 54.48 7.27 80.39
Displaying items 201-250 of 970 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.