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qh_2_scaffold_2024

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qh_2_scaffold_2024_1
halophilic archaeon J07HX5, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(3..896)
DNA (894bp) protein (298aa)
btuF; ABC-type vitamin B12 transporter, B12-binding component BtuF id=24655333 bin=uncultured_archaeon_J07HX5 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultured_archaeon_J07HX5
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:ERG88817.1}; TaxID=1325472 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic arch
btuF; ABC-type vitamin B12 transporter, B12-binding component BtuF
qh_2_scaffold_2024_2
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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958..2058
DNA (1101bp) protein (367aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=halophilic archaeon J07HX64 RepID=U1P156_9EURY
ABC-type Fe3+-siderophore transport system, permease component {ECO:0000313|EMBL:ERH10345.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeo
btuC; corrinoid ABC transporter permease
qh_2_scaffold_2024_3
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2055..2810
DNA (756bp) protein (252aa)
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component n=1 Tax=halophilic archaeon J07HX64 RepID=U1PIT9_9EURY
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component {ECO:0000313|EMBL:ERH10346.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic
ABC transporter
qh_2_scaffold_2024_4
unknown

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2812..3135
DNA (324bp) protein (108aa)

This feature has no annotations

qh_2_scaffold_2024_5
Natrialba aegyptia, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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3420..4604
DNA (1185bp) protein (395aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:00
Protoheme IX farnesyltransferase n=1 Tax=Natrialba aegyptia DSM 13077 RepID=M0AMP6_9EURY
protoheme IX farnesyltransferase
qh_2_scaffold_2024_6
Haloarcula sp. CBA1115, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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4658..4894
DNA (237bp) protein (79aa)
Putative selenoprotein n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KMZ9_9EURY
selenoprotein
Selenoprotein {ECO:0000313|EMBL:AJF26382.1}; TaxID=1592728 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sp. CBA1115.;"
qh_2_scaffold_2024_7
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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4988..5938
DNA (951bp) protein (317aa)
ABC transporter n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CBJ4_9EURY
ABC transporter {ECO:0000313|EMBL:ELZ20656.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-1.;"
ABC transporter
qh_2_scaffold_2024_8
Haloferax larsenii, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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6855..7754
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Haloferax larsenii JCM 13917 RepID=M0H0E2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ77976.1}; TaxID=1227460 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax larsenii JCM 13917.;"
hypothetical protein
qh_2_scaffold_2024_9
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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7805..8929
DNA (1125bp) protein (375aa)
NADH dehydrogenase, FAD-containing subunit n=1 Tax=halophilic archaeon J07HX64 RepID=U1NZ80_9EURY
NADH dehydrogenase, FAD-containing subunit {ECO:0000313|EMBL:ERH09550.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
qh_2_scaffold_2024_10
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(9054..9368)
DNA (315bp) protein (105aa)
Uncharacterized protein n=2 Tax=Haloarcula hispanica RepID=G0HTN3_HALHT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM56093.1}; TaxID=634497 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula hispanica (strain
qh_2_scaffold_2024_11
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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9517..10377
DNA (861bp) protein (287aa)
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF id=24644819 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
secF; preprotein translocase subunit SecF
qh_2_scaffold_2024_12
halophilic archaeon J07HX5, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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10374..11885
DNA (1512bp) protein (504aa)
Protein-export membrane protein SecD n=1 Tax=halophilic archaeon J07HX5 RepID=U1MWZ0_9EURY
Protein-export membrane protein SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1325472 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX5.;"
preprotein translocase subunit SecD
qh_2_scaffold_2024_trna_1
unknown

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12012..12094
DNA (83bp)
transferRNA
qh_2_scaffold_2024_13
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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12115..12630
DNA (516bp) protein (172aa)
30S ribosomal protein S13 n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PFE3_9EURY
30S ribosomal protein S18e (S13p)
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiamatea
qh_2_scaffold_2024_14
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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12630..13154
DNA (525bp) protein (175aa)
rps4p; 30S ribosomal protein S4P; K02986 small subunit ribosomal protein S4 id=24645653 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000256|SAAS:SAAS00016650}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J
rps4p; 30S ribosomal protein S4P
Displaying 15 items

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