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qh_2_scaffold_556

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Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qh_2_scaffold_556_1
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(2..154)
DNA (153bp) protein (51aa)
ksgA; probable dimethyladenosine transferase (EC:2.1.1.-)
Probable ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rul
Probable ribosomal RNA small subunit methyltransferase A n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XRN3_NATM8
qh_2_scaffold_556_2
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(208..783)
DNA (576bp) protein (192aa)
Putative tRNA-specific adenosine deaminase {ECO:0000313|EMBL:CAI49931.1}; EC=3.5.4.- {ECO:0000313|EMBL:CAI49931.1};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Haloba
Putative tRNA-specific adenosine deaminase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IPL9_NATPD
hypothetical protein
qh_2_scaffold_556_3
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(855..1211)
DNA (357bp) protein (119aa)
rpoF; DNA-directed RNA polymerase subunit F (EC:2.7.7.6)
DNA-directed RNA polymerase subunit F {ECO:0000313|EMBL:CAI49932.1}; EC=2.7.7.6 {ECO:0000313|EMBL:CAI49932.1};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteri
DNA-directed RNA polymerase subunit F n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IPL8_NATPD
qh_2_scaffold_556_4
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(1208..1501)
DNA (294bp) protein (98aa)
50S ribosomal protein L21e n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=RL21_NATPD
rpl21R; 50S ribosomal protein L21e
50S ribosomal protein L21e {ECO:0000255|HAMAP-Rule:MF_00369}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharao
qh_2_scaffold_556_5
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(1543..1980)
DNA (438bp) protein (146aa)
Elongation factor 1-beta n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=EF1B_NATPD
ef1B; elongation factor 1-beta
Elongation factor 1-beta {ECO:0000255|HAMAP-Rule:MF_00043}; Short=EF-1-beta {ECO:0000255|HAMAP-Rule:MF_00043};; aEF-1beta {ECO:0000255|HAMAP-Rule:MF_00043}; TaxID=348780 species="Archaea; Euryarchaeot
qh_2_scaffold_556_6
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2352..3293
DNA (942bp) protein (314aa)
tRNA(Met) cytidine acetyltransferase TmcA {ECO:0000256|HAMAP-Rule:MF_01886}; EC=2.3.1.193 {ECO:0000256|HAMAP-Rule:MF_01886};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriale
Putative tRNA(Met) cytidine acetyltransferase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IPL4_NATPD
hypothetical protein
qh_2_scaffold_556_7
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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3301..3834
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J3EZN3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN61102.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
hypothetical protein
qh_2_scaffold_556_8
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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3917..4462
DNA (546bp) protein (182aa)
Glycosyltransferase (Fragment) n=1 Tax=Haloquadratum walsbyi J07HQW2 RepID=U1PW41_9EURY
Glycosyltransferase {ECO:0000313|EMBL:ERG96646.1}; Flags: Fragment;; TaxID=1238425 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum
glycosyl transferase family protein
qh_2_scaffold_556_9
Bacillus azotoformans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4344..4880)
DNA (537bp) protein (179aa)
Putative ring-cleavage extradiol dioxygenase {ECO:0000313|EMBL:KEF37264.1}; EC=1.13.11.2 {ECO:0000313|EMBL:KEF37264.1};; TaxID=1348973 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae;
UPI0003D5DF11 related cluster n=1 Tax=unknown RepID=UPI0003D5DF11
catechol 2,3-dioxygenase
qh_2_scaffold_556_10
Natronorubrum tibetense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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5524..6366
DNA (843bp) protein (281aa)
Blue (Type 1) copper domain-containing protein n=1 Tax=Natronorubrum tibetense GA33 RepID=L9VGT2_9EURY
Blue (Type 1) copper domain-containing protein {ECO:0000313|EMBL:ELY36177.1}; TaxID=1114856 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natrono
blue (type 1) copper domain-containing protein
qh_2_scaffold_556_11
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6730..7926)
DNA (1197bp) protein (399aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1227455 species="Archaea; Euryarchaeota; Halobac
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MFP1_9EURY
qh_2_scaffold_556_12
Natronococcus jeotgali, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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8181..9062
DNA (882bp) protein (294aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase n=1 Tax=Natronococcus jeotgali DSM 18795 RepID=L9XG51_9EURY
5-carboxymethyl-2-hydroxymuconate delta-isomerase {ECO:0000313|EMBL:ELY60695.1}; TaxID=1227498 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natr
5-carboxymethyl-2-hydroxymuconate isomerase
qh_2_scaffold_556_13
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(9091..9789)
DNA (699bp) protein (233aa)
Biotin/lipoate A/B protein ligase family domain-containing protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M433_9EURY
Biotin/lipoate A/B protein ligase family domain-containing protein {ECO:0000313|EMBL:EMA40173.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloco
Lipoate-protein ligase A-like protein
qh_2_scaffold_556_14
unknown

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comp(9841..10068)
DNA (228bp) protein (76aa)

This feature has no annotations

qh_2_scaffold_556_15

Not on your lists

10284..11387
DNA (1104bp) protein (368aa)
L-alanine-DL-glutamate epimerase related enzymes of enolase superfamily n=1 Tax=uncultured archaeon A07HB70 RepID=V4Y4A9_9ARCH
L-alanine-DL-glutamate epimerase related enzymes of enolase superfamily {ECO:0000313|EMBL:ESS05827.1}; TaxID=1412872 species="Archaea; environmental samples.;" source="uncultured archaeon A07HB70.;"
hypothetical protein
qh_2_scaffold_556_16
unknown

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comp(11411..12481)
DNA (1071bp) protein (357aa)

This feature has no annotations

qh_2_scaffold_556_17
Natronococcus occultus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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12636..13646
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Natronococcus occultus SP4 RepID=L0JUZ0_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB36115.1}; Flags: Precursor;; TaxID=694430 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcu
qh_2_scaffold_556_18
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(13716..15563)
DNA (1848bp) protein (616aa)
DNA mismatch repair protein MutL n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MP70_9EURY
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus sac
mutL; DNA mismatch repair protein MutL
qh_2_scaffold_556_19

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comp(15514..17070)
DNA (1557bp) protein (519aa)
Mismatch repair ATPase (MutS family) (Fragment) n=1 Tax=uncultured archaeon A07HN63 RepID=V4Y6B9_9ARCH
Mismatch repair ATPase (MutS family) {ECO:0000313|EMBL:ESS08261.1}; Flags: Fragment;; TaxID=1412873 species="Archaea; environmental samples.;" source="uncultured archaeon A07HN63.;"
DNA mismatch repair protein MutS
qh_2_scaffold_556_20
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(17168..18298)
DNA (1131bp) protein (377aa)
DNA mismatch repair protein MutS n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MZ40_9EURY
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus sal
mutS1a; DNA mismatch repair protein MutS
qh_2_scaffold_556_21
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18410..18967)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J2ZHF0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN60135.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
hypothetical protein
qh_2_scaffold_556_22
Mycobacterium phlei, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(19091..19972)
DNA (882bp) protein (294aa)
Esterase/lipase n=1 Tax=Mycobacterium phlei RIVM601174 RepID=I0RWE2_MYCPH
Esterase/lipase {ECO:0000313|EMBL:EID15445.1}; TaxID=1150599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium phlei RIVM601174.;"
alpha/beta hydrolase fold-3 domain-containing protein
qh_2_scaffold_556_23
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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20134..20256
DNA (123bp) protein (41aa)
Deacylase {ECO:0000313|EMBL:ELZ33871.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum JCM 14848.;"
deacylase
Displaying 23 items

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