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qh_2_scaffold_109

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qh_2_scaffold_109_1
unknown

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436..714
DNA (279bp) protein (93aa)

This feature has no annotations

qh_2_scaffold_109_2
Thermococcus sp. 4557, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(811..1470)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Thermococcus sp. (strain CGMCC 1.5172 / 4557) RepID=G0HMQ3_THES4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK72490.1}; TaxID=1042877 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus sp. (strain CGM
qh_2_scaffold_109_3
Halostagnicola larsenii, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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1599..2075
DNA (477bp) protein (159aa)
Putative cyclase n=1 Tax=Natrinema gari JCM 14663 RepID=L9ZA91_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG02021.1}; TaxID=797299 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola larsenii XH-48.
qh_2_scaffold_109_4
Natrinema gari, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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2120..2314
DNA (195bp) protein (65aa)
HTH DNA binding domain family protein n=1 Tax=Natrinema gari JCM 14663 RepID=L9ZBC8_9EURY
HTH DNA binding domain family protein {ECO:0000313|EMBL:ELY82912.1}; TaxID=1230459 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema gari JCM 1
HTH DNA binding domain family protein
qh_2_scaffold_109_5
Natrinema gari, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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2353..2736
DNA (384bp) protein (128aa)
HTH DNA binding domain family protein n=1 Tax=Natrinema gari JCM 14663 RepID=L9ZBC8_9EURY
HTH DNA binding domain family protein {ECO:0000313|EMBL:ELY82912.1}; TaxID=1230459 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema gari JCM 1
HTH DNA binding domain family protein
qh_2_scaffold_109_6
Haloterrigena salina, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(2940..5126)
DNA (2187bp) protein (729aa)
Elongation factor 2 n=1 Tax=Haloterrigena salina JCM 13891 RepID=M0CND8_9EURY
Elongation factor 2 {ECO:0000256|HAMAP-Rule:MF_00054, ECO:0000256|SAAS:SAAS00088569}; Short=EF-2 {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1227488 species="Archaea; Euryarchaeota; Halobacteria; Natria
translation elongation factor aEF-2
qh_2_scaffold_109_7
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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5767..6519
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Halococcus hamelinensis RepID=UPI000299E93E
Uncharacterized protein {ECO:0000313|EMBL:EMA43375.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
qh_2_scaffold_109_8
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6717..7331)
DNA (615bp) protein (205aa)
30S ribosomal protein S7 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MCA1_9EURY
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480, ECO:0000256|RuleBase:RU003621}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;"
30S ribosomal protein S7P
qh_2_scaffold_109_9
Halobacterium salinarum, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(7335..7763)
DNA (429bp) protein (143aa)
30S ribosomal protein S12 n=2 Tax=Halobacterium salinarum RepID=RS12_HALS3
rps12P; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000255|HAMAP-Rule:MF_00403}; HmaS12; TaxID=478009 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacteri
qh_2_scaffold_109_10
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(7858..8328)
DNA (471bp) protein (157aa)
Transcription elongation factor NusA-like protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MVX7_9EURY
Probable transcription termination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source=
NusA family KH domain protein
qh_2_scaffold_109_11
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(8343..9581)
DNA (1239bp) protein (413aa)
rpoA''; DNA-directed RNA polymerase subunit A'' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit A'' {ECO:0000256|HAMAP-Rule:MF_00411}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00411};; TaxID=634497 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; H
DNA-directed RNA polymerase subunit A'' n=2 Tax=Haloarcula hispanica RepID=G0HSR2_HALHT
qh_2_scaffold_109_12
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(9574..12531)
DNA (2958bp) protein (986aa)
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae
DNA-directed RNA polymerase subunit A n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4GRB9_9EURY
DNA-directed RNA polymerase subunit A'
qh_2_scaffold_109_13
Halococcus sp. 197A, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(12580..14406)
DNA (1827bp) protein (609aa)
rpoB; DNA-directed RNA polymerase subunit B' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] id=24646171 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU000431};; TaxID=1197130 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae
DNA-directed RNA polymerase subunit B' (EC:2.7.7.6)
qh_2_scaffold_109_14
Halorubrum distributum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14512..16077)
DNA (1566bp) protein (522aa)
DNA-directed RNA polymerase subunit B {ECO:0000313|EMBL:ELZ50928.1}; EC=2.7.7.6 {ECO:0000313|EMBL:ELZ50928.1};; TaxID=1227468 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacace
DNA-directed RNA polymerase subunit B n=4 Tax=Halorubrum RepID=M0D7L7_9EURY
DNA-directed RNA polymerase subunit beta''
qh_2_scaffold_109_15
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(16074..16304)
DNA (231bp) protein (77aa)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Hal
DNA-directed RNA polymerase subunit H n=1 Tax=Halobacterium sp. DL1 RepID=G4IAE4_9EURY
RNA polymerase Rpb5
qh_2_scaffold_109_16
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(16374..16961)
DNA (588bp) protein (196aa)
Putative uncharacterized protein n=2 Tax=Haladaptatus paucihalophilus RepID=E7QTR2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EFW91991.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophil
Protein of unknown function (DUF3257)
qh_2_scaffold_109_trna_1
unknown

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comp(16987..17059)
DNA (73bp)
transferRNA
qh_2_scaffold_109_17
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(17235..17975)
DNA (741bp) protein (247aa)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CUB7_9EURY
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:ELZ26821.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" sou
protein-L-isoaspartate O-methyltransferase
qh_2_scaffold_109_18
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(18164..18853)
DNA (690bp) protein (230aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:M
pimT1; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MTH6_HALMO
qh_2_scaffold_109_19
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(18926..19582)
DNA (657bp) protein (219aa)
hypothetical protein id=24645183 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
Uncharacterized protein {ECO:0000313|EMBL:EMA49916.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
hypothetical protein
qh_2_scaffold_109_20
Natronolimnobius innermongolicus, Natronolimnobius, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(19593..20315)
DNA (723bp) protein (241aa)
ATP-grasp protein-like protein n=1 Tax=Natronolimnobius innermongolicus JCM 12255 RepID=L9XBE3_9EURY
ATP-grasp protein-like protein {ECO:0000313|EMBL:ELY58962.1}; TaxID=1227499 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronolimnobius.;" source="Natronolimnobius inn
ATP-grasp protein-like protein
Displaying 21 items

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