ggKbase home page

qh_3_scaffold_345

Search features with annotation key words

Displaying 16 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qh_3_scaffold_345_1
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3..350)
DNA (348bp) protein (116aa)
Putative nickel-responsive regulator n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0M6J8_9EURY
Putative nickel-responsive regulator {ECO:0000256|HAMAP-Rule:MF_00476}; TaxID=1227454 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma nit
putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain
qh_3_scaffold_345_2
unknown

Not on your lists

632..886
DNA (255bp) protein (85aa)

This feature has no annotations

qh_3_scaffold_345_3
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

944..1630
DNA (687bp) protein (229aa)
ABC-type transport system permease protein (Probable substrate cobalt/nickel/biotin) n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XRF8_NATM8
cbiM; ABC-type transport system permease protein (probable substrate cobalt/nickel/biotin)
ABC-type transport system permease protein (Probable substrate cobalt/nickel/biotin) {ECO:0000313|EMBL:CCQ36794.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobac
qh_3_scaffold_345_4
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1831..2616
DNA (786bp) protein (262aa)
cbiQ; ABC-type cobalt transport system, permease II; K02008 cobalt/nickel transport system permease protein id=24629216 bin=Haloquadratum_Walsbyi_J07HWQ1 species=Haloquadratum walsbyi genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_Walsbyi_J07HWQ1
ABC-type cobalt transport system, permease component CbiQ related transporter {ECO:0000313|EMBL:ERG91966.1}; TaxID=1238424 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae;
cbiQ2; ABC-type transport system permease protein (probable substrate cobalt/nickel/biotin)
qh_3_scaffold_345_5
Haloquadratum sp. J07HQX50, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2792..3400
DNA (609bp) protein (203aa)
ABC-type cobalt transport system, ATPase component n=1 Tax=Haloquadratum sp. J07HQX50 RepID=U1NKM1_9EURY
ABC-type cobalt transport system, ATPase component {ECO:0000313|EMBL:ERG97543.1}; TaxID=1238426 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="H
cbiO; ABC-type transport system ATP-binding protein (probable substrate cobalt/nickel/biotin)
qh_3_scaffold_345_6
Halorubrum terrestre, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3519..3797)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Halorubrum terrestre JCM 10247 RepID=M0D5H0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ30741.1}; TaxID=1227486 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum terrestre JCM 10247.
hypothetical protein
qh_3_scaffold_345_7
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3897..5078)
DNA (1182bp) protein (394aa)
Nucleotidyl transferase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N8N9_9EURY
Nucleotidyl transferase {ECO:0000313|EMBL:EMA53943.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
glucose-1-phosphate thymidylyltransferase
qh_3_scaffold_345_8
unknown

Not on your lists

comp(5231..5359)
DNA (129bp) protein (43aa)

This feature has no annotations

qh_3_scaffold_345_9
unknown

Not on your lists

5456..5584
DNA (129bp) protein (43aa)

This feature has no annotations

qh_3_scaffold_345_10
Haloarcula sinaiiensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6032..6574
DNA (543bp) protein (181aa)
Uncharacterized protein n=3 Tax=Haloarcula RepID=Q5UZT0_HALMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMA15117.1}; TaxID=662476 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula sinaiiensis ATCC
qh_3_scaffold_345_11
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6571..7620
DNA (1050bp) protein (350aa)
homoserine dehydrogenase (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] id=24616505 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
Homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase {ECO:0000313|EMBL:ESP87588.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Halob
qh_3_scaffold_345_12
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7800..9065
DNA (1266bp) protein (422aa)
elongation factor 1-alpha (EC:2.7.7.4)
Elongation factor 1-alpha n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M5R7_9EURY
Elongation factor 1-alpha {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004060}; Short=EF-1-alpha {ECO:0000256|HAMAP-Rule:MF_00118};; Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118};
qh_3_scaffold_345_13
Halostagnicola larsenii, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


9066..9374
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=4 Tax=Haloquadratum walsbyi RepID=RS10_HALWD
rps10p; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508, ECO:0000256|SAAS:SAAS00243320}; TaxID=797299 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" s
qh_3_scaffold_345_14
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9864..10535
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J9S3_HALJB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADJ16412.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halalkalicoccus jeotgal
qh_3_scaffold_345_trna_1
unknown

Not on your lists

10638..10709
DNA (72bp)
transferRNA
qh_3_scaffold_345_15
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10898..11608)
DNA (711bp) protein (237aa)
Putative copper binding protein n=2 Tax=Haloarcula RepID=Q5V701_HALMA
putative copper binding protein
Putative copper binding protein {ECO:0000313|EMBL:EMA27624.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica
Displaying 16 items

View Taxonomy