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qh_3_scaffold_118

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qh_3_scaffold_118_1
Methanoregula formicica, Methanoregula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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1..387
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP) RepID=L0HHA1_METFS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB02459.1}; TaxID=593750 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula.;" source="Methanoregula form
qh_3_scaffold_118_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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492..1625
DNA (1134bp) protein (378aa)
Mrp protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S4C5_SALRD
mrp; mrp protein
Mrp protein {ECO:0000313|EMBL:ABC44679.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain DS
qh_3_scaffold_118_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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1796..2077
DNA (282bp) protein (94aa)
Uncharacterized protein n=2 Tax=Salinibacter ruber RepID=D5H7B4_SALRM
hypothetical protein
Conserved domain protein {ECO:0000313|EMBL:ABC44958.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rub
qh_3_scaffold_118_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(2138..2761)
DNA (624bp) protein (208aa)
Conserved hypohtetical protein, secreted n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7B3_SALRM
hypothetical protein
Conserved hypohtetical protein, secreted {ECO:0000313|EMBL:CBH23918.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="
qh_3_scaffold_118_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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2973..4256
DNA (1284bp) protein (428aa)
Translation initiation factor eIF-2B alpha subunit n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S4C9_SALRD
translation initiation factor eIF-2B alpha subunit
Translation initiation factor eIF-2B alpha subunit {ECO:0000313|EMBL:ABC45786.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;
qh_3_scaffold_118_6
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4346..4705)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BME7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR23485.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mob
hypothetical protein
qh_3_scaffold_118_7
Pelodictyon phaeoclathratiforme, Pelodictyon, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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comp(4690..5085)
DNA (396bp) protein (132aa)
DNA polymerase beta domain protein region n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SAE6_PELPB
DNA polymerase beta domain-containing protein
DNA polymerase beta domain protein region {ECO:0000313|EMBL:ACF43832.1}; TaxID=324925 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon.;"
qh_3_scaffold_118_trna_1
unknown

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5336..5406
DNA (71bp)
transferRNA
qh_3_scaffold_118_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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5453..6406
DNA (954bp) protein (318aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000313|EMBL:CBH23915.1}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583, ECO:00003
Ribose-phosphate pyrophosphokinase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7B0_SALRM
prs; ribose-phosphate pyrophosphokinase
qh_3_scaffold_118_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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6700..7449
DNA (750bp) protein (250aa)
rplY; 50S ribosomal protein L25
rplY; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 id=24657687 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=761659 sp
qh_3_scaffold_118_10
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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7562..8128
DNA (567bp) protein (189aa)
peptidyl-tRNA hydrolase; K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] id=24657686 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Peptidyl-tRNA hydrolase {ECO:0000255|HAMAP-Rule:MF_00083}; Short=PTH {ECO:0000255|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000255|HAMAP-Rule:MF_00083};; TaxID=309807 species="Bacteria; Bacteroidetes;
peptidyl-tRNA hydrolase
qh_3_scaffold_118_11
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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8390..10501
DNA (2112bp) protein (704aa)
Putative K(+)-stimulated pyrophosphate-energized sodium pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound sodium-translocating pyrophosphatase {ECO:
potassium transporter n=1 Tax=Salisaeta longa RepID=UPI0003B4CF23
V-type H(+)-translocating pyrophosphatase
qh_3_scaffold_118_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10517..11029
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H4A7_SALRM
conserved hypothetical protein containing DUF497
Uncharacterized protein {ECO:0000313|EMBL:CBH22747.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qh_3_scaffold_118_13
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10995..11324
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B438E7
Uncharacterized protein {ECO:0000313|EMBL:GAK69163.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;"
hypothetical protein
qh_3_scaffold_118_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

11391..13181
DNA (1791bp) protein (597aa)
2-oxo acid dehydrogenase acyltransferase catalytic subunit; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] id=24657684 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
2-oxo acid dehydrogenase acyltransferase catalytic subunit
2-oxo acid dehydrogenases acyltransferase (Catalytic domain) protein {ECO:0000313|EMBL:ABC43857.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermace
qh_3_scaffold_118_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(13294..13623)
DNA (330bp) protein (110aa)
TrkA domain protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7A5_SALRM
trkA domain protein
TrkA domain protein {ECO:0000313|EMBL:ABC44474.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (s
qh_3_scaffold_118_16
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

13749..15077
DNA (1329bp) protein (443aa)
transporter
transporter id=24659287 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Transporter, putative {ECO:0000313|EMBL:ABC44512.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber
qh_3_scaffold_118_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

15240..15827
DNA (588bp) protein (196aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24453.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
hypothetical protein id=24659286 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
qh_3_scaffold_118_18
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(15843..16775)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S2X1_SALRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC45035.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qh_3_scaffold_118_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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17040..17636
DNA (597bp) protein (199aa)
Bifunctional protein PyrR n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S2X2_SALRD
phosphoribosyl transferase domain-containing protein
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
qh_3_scaffold_118_20
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

17687..18655
DNA (969bp) protein (323aa)
pyrB; aspartate carbamoyltransferase; K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] id=24659283 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001, ECO:0000313|EMBL:CBH24450.1};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_0000
pyrB; aspartate carbamoyltransferase
qh_3_scaffold_118_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(18671..20116)
DNA (1446bp) protein (482aa)
hypothetical protein
hypothetical protein id=24659281 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH24447.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qh_3_scaffold_118_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(20166..22907)
DNA (2742bp) protein (914aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI000378A292
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC46121.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qh_3_scaffold_118_23
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

23126..23581
DNA (456bp) protein (152aa)
lolD; lipoprotein releasing system ABC transporter ATP-binding protein
lolD; lipoprotein releasing system ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein id=24659280 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ABC43616.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Sali
Displaying 24 items

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