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QH_6_UNK

In projects: QH_6  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.84 Longest contig: 86.52 Kbp Bin length: 43.49 Mbp GC content: 61.40 %
Contigs count: 17572 Features count: 56719 rRNAs count: 11 tRNAs count: 537

Genome completeness

megabin RP 45 / 55 MC: 35 BSCG 42 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 17051-17100 of 17572 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_16806
Species: Halovirus HGTV-1 (100%)
1 1285 bp 39.92 5.53 53.93
qh_6_scaffold_25858 4 1646 bp 48.30 5.53 80.01
qh_6_scaffold_10831 3 1754 bp 55.19 5.53 39.00
qh_6_scaffold_16824 1 1284 bp 57.71 5.53 18.69
qh_6_scaffold_21994
Species: R_Bacteroidetes_44_7 (50%)
2 1030 bp 39.81 5.53 81.84
qh_6_scaffold_21535 1 1048 bp 51.62 5.53 64.41
qh_6_scaffold_18776 1 1175 bp 52.85 5.53 99.06
qh_6_scaffold_18789
Species: RBG_13_Chloroflexi_51_36_curated (50%)
2 1175 bp 61.53 5.53 100.09
qh_6_scaffold_11743 3 1666 bp 50.00 5.52 60.50
qh_6_scaffold_22361 2 1014 bp 45.46 5.52 77.81
qh_6_scaffold_14301 3 1449 bp 61.63 5.52 98.34
qh_6_scaffold_21453
Species: Halorubrum sp. AJ67 (100%)
1 1051 bp 53.66 5.52 97.34
qh_6_scaffold_10635 4 1774 bp 59.41 5.52 61.89
qh_6_scaffold_21489 3 1050 bp 58.00 5.52 92.86
qh_6_scaffold_17112
Phylum: Parcubacteria (50%)
4 1267 bp 42.86 5.52 82.16
qh_6_scaffold_10689 4 2536 bp 53.86 5.52 98.90
qh_6_scaffold_21396 2 1053 bp 54.13 5.51 66.10
qh_6_scaffold_10352
Domain: Bacteria (50%)
4 3505 bp 42.80 5.51 51.10
qh_6_scaffold_20975 2 1071 bp 56.21 5.51 87.68
qh_6_scaffold_20310
Order: Natrialbales (66.67%)
3 1852 bp 51.40 5.51 72.89
qh_6_scaffold_13278
Species: Halopiger xanaduensis (50%)
2 1527 bp 51.93 5.50 77.01
qh_6_scaffold_19735 1 1128 bp 41.67 5.50 99.73
qh_6_scaffold_28231
Species: Haloferax gibbonsii (100%)
1 1364 bp 55.94 5.50 99.85
qh_6_scaffold_19393 2 1145 bp 58.08 5.50 79.91
qh_6_scaffold_16696 2 1292 bp 56.27 5.50 98.45
qh_6_scaffold_20905
Species: Halosimplex carlsbadense (50%)
2 1074 bp 43.02 5.49 69.27
qh_6_scaffold_19325
Species: Hydra vulgaris (50%)
2 1147 bp 55.88 5.49 78.73
qh_6_scaffold_17274 1 1257 bp 53.78 5.49 99.76
qh_6_scaffold_20068
Species: Halorubrum sp. AJ67 (50%)
2 1112 bp 52.43 5.49 27.52
qh_6_scaffold_26143
Species: Alteromonas macleodii (50%)
2 1493 bp 44.21 5.49 66.31
qh_6_scaffold_4691 10 4739 bp 48.11 5.49 70.01
qh_6_scaffold_15790
Species: Haloarcula sp. CBA1115 (50%)
2 1347 bp 57.91 5.49 95.55
qh_6_scaffold_13951 2 1475 bp 49.90 5.49 33.56
qh_6_scaffold_21786 2 1039 bp 57.36 5.49 70.45
qh_6_scaffold_19269 3 1150 bp 52.78 5.48 97.30
qh_6_scaffold_3025
Phylum: Bacteroidetes (50%)
4 3631 bp 50.95 5.48 95.68
qh_6_scaffold_21816 3 1607 bp 59.49 5.48 93.15
qh_6_scaffold_11452 3 1697 bp 45.73 5.48 93.34
qh_6_scaffold_12382
Species: Haloarcula japonica (100%)
1 1605 bp 46.73 5.48 99.81
qh_6_scaffold_14930
Class: Halobacteria (66.67%)
3 1405 bp 65.98 5.48 80.71
qh_6_scaffold_14936 2 1405 bp 53.17 5.48 79.86
qh_6_scaffold_18189
Species: Thioploca ingrica (50%)
2 1205 bp 42.99 5.48 98.84
qh_6_scaffold_18925
Species: Dyadobacter fermentans (50%)
2 1168 bp 45.89 5.48 53.17
qh_6_scaffold_22612 3 1003 bp 56.93 5.48 42.17
qh_6_scaffold_11854 5 3229 bp 51.56 5.48 71.07
qh_6_scaffold_17846
Species: Halovirus HGTV-1 (100%)
1 1223 bp 52.41 5.48 55.93
qh_6_scaffold_18864
Species: Tolypothrix campylonemoides (100%)
1 1170 bp 48.29 5.47 84.62
qh_6_scaffold_17106 4 3344 bp 52.66 5.47 63.70
qh_6_scaffold_20820
Species: Rubrobacter xylanophilus (100%)
1 1078 bp 67.35 5.47 97.68
qh_6_scaffold_15077
Species: Chroococcidiopsis thermalis (50%)
2 2778 bp 42.98 5.47 83.05
Displaying items 17051-17100 of 17572 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.