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QH_6_Halobacteriales_66_18

In projects: QH_6  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QH_6_UNK

Properties

Avg. coverage: 18.49 Longest contig: 84.18 Kbp Bin length: 2.70 Mbp GC content: 65.95 %
Contigs count: 211 Features count: 3155 rRNAs count: 0 tRNAs count: 40

Genome completeness

near complete RP 35 / 55 MC: 6 BSCG 29 / 51 MC: 3 ASCG 37 / 38 MC: 4
Displaying items 151-200 of 211 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_4284
Order: Halobacteriales (53.85%)
13 8304 bp 69.58 19.77 89.74
qh_6_scaffold_1784
Order: Halobacteriales (61.54%)
13 12434 bp 66.99 21.78 89.75
qh_6_scaffold_1689
Order: Halobacteriales (58.33%)
12 7596 bp 69.67 19.77 89.85
qh_6_scaffold_2353
Order: Halobacteriales (71.43%)
7 6796 bp 66.77 18.85 89.96
qh_6_scaffold_977
Order: Halobacteriales (62.5%)
24 18707 bp 68.47 18.44 90.11
qh_6_scaffold_303
Class: Halobacteria (84.21%)
38 35325 bp 66.63 18.78 90.21
qh_6_scaffold_337
Order: Halobacteriales (72.73%)
44 33428 bp 67.27 18.30 90.26
qh_6_scaffold_938
Order: Halobacteriales (50%)
20 19651 bp 69.78 18.64 90.32
qh_6_scaffold_167
Class: Halobacteria (80.95%)
21 19449 bp 63.66 14.51 90.39
qh_6_scaffold_1731
Order: Halobacteriales (50%)
4 4878 bp 67.02 20.97 90.41
qh_6_scaffold_1513
Order: Halobacteriales (68.75%)
16 15152 bp 66.18 22.80 90.42
qh_6_scaffold_1480
Class: Halobacteria (85.71%)
7 5265 bp 68.38 16.52 90.54
qh_6_scaffold_702
Genus: Haloferax (50%)
10 10355 bp 67.46 19.58 90.62
qh_6_scaffold_2430
Class: Halobacteria (80%)
15 9236 bp 68.32 20.29 90.72
qh_6_scaffold_864
Order: Halobacteriales (72%)
25 23657 bp 68.81 17.99 90.75
qh_6_scaffold_559
Class: Halobacteria (68.18%)
22 20316 bp 67.31 19.77 90.75
qh_6_scaffold_500
Order: Halobacteriales (59.57%)
47 44173 bp 68.01 18.22 90.76
qh_6_scaffold_762
Order: Halobacteriales (57.69%)
26 20598 bp 66.72 18.45 90.82
qh_6_scaffold_1400
Class: Halobacteria (71.43%)
7 6207 bp 67.55 18.67 91.01
qh_6_scaffold_1036
Order: Haloferacales (54.55%)
22 22366 bp 67.34 19.61 91.06
qh_6_scaffold_4026
Order: Halobacteriales (66.67%)
12 7847 bp 67.81 22.14 91.14
qh_6_scaffold_3457 5 3391 bp 55.26 20.52 91.21
qh_6_scaffold_459
Class: Halobacteria (83.78%)
37 39589 bp 67.44 17.74 91.25
qh_6_scaffold_2804
Order: Halobacteriales (58.33%)
12 8645 bp 68.29 19.61 91.27
qh_6_scaffold_477
Class: Halobacteria (78.95%)
19 15550 bp 67.76 20.72 91.50
qh_6_scaffold_669
Class: Halobacteria (71.43%)
21 20648 bp 67.24 16.40 91.71
qh_6_scaffold_671
Order: Halobacteriales (69.23%)
13 9903 bp 67.07 17.49 91.76
qh_6_scaffold_6479
Species: Halobacterium salinarum (50%)
4 3666 bp 54.53 34.92 91.82
qh_6_scaffold_670
Class: Halobacteria (83.33%)
18 18666 bp 67.57 19.62 91.90
qh_6_scaffold_431
Order: Halobacteriales (50%)
14 10407 bp 67.72 21.67 91.99
qh_6_scaffold_3909
Order: Halobacteriales (100%)
6 3726 bp 66.77 18.57 92.11
qh_6_scaffold_3381
Order: Natrialbales (100%)
3 3436 bp 60.74 16.85 92.11
qh_6_scaffold_2671
Class: Halobacteria (100%)
7 5517 bp 69.00 19.85 92.17
qh_6_scaffold_1117
Order: Halobacteriales (63.16%)
19 12327 bp 66.67 18.96 92.21
qh_6_scaffold_7111
Order: Halobacteriales (57.14%)
7 4016 bp 72.31 19.85 92.48
qh_6_scaffold_307
Order: Halobacteriales (52.94%)
17 14564 bp 59.83 19.23 92.61
qh_6_scaffold_1417 7 7990 bp 68.34 11.64 93.23
qh_6_scaffold_349
Order: Halobacteriales (70%)
20 19555 bp 67.92 17.44 93.24
qh_6_scaffold_121
Order: Halobacteriales (68.42%)
19 19897 bp 67.09 20.46 93.41
qh_6_scaffold_4146
Order: Halobacteriales (55.56%)
9 8943 bp 67.28 19.03 93.43
qh_6_scaffold_564
Order: Halobacteriales (76.47%)
17 12717 bp 69.18 19.07 93.56
qh_6_scaffold_317
Order: Halobacteriales (57.89%)
19 14990 bp 68.75 18.43 93.60
qh_6_scaffold_1409
Order: Halobacteriales (66.67%)
6 8923 bp 67.59 18.16 93.63
qh_6_scaffold_5513
Class: Halobacteria (83.33%)
6 5124 bp 68.25 19.03 93.68
qh_6_scaffold_5825
Genus: Halorubrum (50%)
4 4168 bp 51.39 6.77 94.15
qh_6_scaffold_2245
Genus: Natronococcus (50%)
4 4246 bp 68.65 20.56 94.39
qh_6_scaffold_2314
Order: Halobacteriales (75%)
8 8020 bp 67.79 22.66 94.45
qh_6_scaffold_1511
Order: Haloferacales (50%)
6 5202 bp 69.09 22.63 94.52
qh_6_scaffold_7359
Class: Halobacteria (50%)
4 3286 bp 64.79 18.87 94.58
qh_6_scaffold_401
Genus: Natronomonas (53.85%)
13 10920 bp 66.81 21.28 94.81
Displaying items 151-200 of 211 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.