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QH_6_Viridiplantae_55_7

QH_6_Eukaryota_55_7
In projects: QH_6

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QH_6_UNK

Properties

Avg. coverage: 6.94 Longest contig: 14.37 Kbp Bin length: 2.84 Mbp GC content: 55.11 %
Contigs count: 1124 Features count: 2738 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 27 / 55 MC: 7 BSCG 14 / 51 MC: 4 ASCG 14 / 38 MC: 4
Displaying items 501-550 of 1124 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_10801
Species: Ostreococcus tauri (50%)
2 1758 bp 53.36 7.11 98.46
qh_6_scaffold_15180
Species: Zea mays (50%)
2 1387 bp 50.61 8.72 46.72
qh_6_scaffold_31903
Species: Tetraselmis sp. GSL018 (50%)
2 1188 bp 56.99 6.73 81.06
qh_6_scaffold_10573
Species: Micromonas sp. RCC299 (50%)
2 2963 bp 52.38 5.97 42.93
qh_6_scaffold_13338
Species: Ostreococcus 'lucimarinus' (100%)
2 2932 bp 53.99 6.14 91.68
qh_6_scaffold_14260
Species: Ostreococcus 'lucimarinus' (50%)
2 1452 bp 51.65 7.44 89.46
qh_6_scaffold_16565
Species: Ricinus communis (50%)
2 1300 bp 54.62 6.69 92.54
qh_6_scaffold_8477
Species: Volvox carteri (50%)
2 2046 bp 57.14 7.53 89.30
qh_6_scaffold_10575
Species: Volvox carteri (50%)
2 1782 bp 57.80 7.24 90.24
qh_6_scaffold_14492
Species: Citrus clementina (50%)
2 1435 bp 50.87 7.60 96.79
qh_6_scaffold_6634
Species: Selaginella moellendorffii (50%)
2 2366 bp 53.13 7.02 75.06
qh_6_scaffold_6404
Species: Coccomyxa subellipsoidea (50%)
2 2410 bp 56.18 6.68 80.79
qh_6_scaffold_7788
Species: Ostreococcus tauri (50%)
2 2752 bp 55.96 7.81 76.31
qh_6_scaffold_8940
Species: Chlorella variabilis (50%)
2 2470 bp 53.16 8.14 99.47
qh_6_scaffold_7098
Species: Micromonas pusilla (50%)
2 2275 bp 58.24 7.12 91.38
qh_6_scaffold_3686
Species: Micromonas sp. RCC299 (50%)
2 3279 bp 56.51 7.99 77.77
qh_6_scaffold_19566
Species: Oryza rufipogon (50%)
2 1136 bp 56.16 7.31 91.90
qh_6_scaffold_5948
Species: Micromonas pusilla (50%)
2 2525 bp 52.59 7.25 90.30
qh_6_scaffold_19567
Species: Ostreococcus tauri (50%)
2 1136 bp 52.38 6.16 71.04
qh_6_scaffold_5026
Species: Amborella trichopoda (50%)
2 2782 bp 55.97 7.12 51.33
qh_6_scaffold_10811
Species: Micromonas sp. RCC299 (50%)
2 1757 bp 55.61 6.89 53.10
qh_6_scaffold_15881
Species: Coccomyxa subellipsoidea (50%)
2 1341 bp 55.26 5.44 44.52
qh_6_scaffold_22331
Species: Tetraselmis sp. GSL018 (50%)
2 1015 bp 57.14 7.19 73.00
qh_6_scaffold_18647
Species: Chlamydomonas reinhardtii (50%)
2 1182 bp 61.59 5.67 43.40
qh_6_scaffold_9093
Species: Selaginella moellendorffii (50%)
2 1961 bp 61.04 5.61 69.61
qh_6_scaffold_22564
Species: Micromonas sp. RCC299 (50%)
2 1005 bp 55.92 8.16 82.09
qh_6_scaffold_2814
Species: Araucaria cunninghamii (50%)
2 3773 bp 57.20 7.71 81.74
qh_6_scaffold_4109
Species: Physcomitrella patens (50%)
2 3098 bp 57.75 6.97 84.64
qh_6_scaffold_6183
Species: Physcomitrella patens (50%)
2 2461 bp 54.49 7.64 82.89
qh_6_scaffold_15886
Species: Jatropha curcas (50%)
2 2193 bp 56.77 6.52 96.03
qh_6_scaffold_11739
Species: Chlamydomonas reinhardtii (50%)
2 1666 bp 56.00 6.90 93.46
qh_6_scaffold_14273
Species: Monoraphidium neglectum (50%)
2 1451 bp 57.20 4.89 67.61
qh_6_scaffold_19573
Species: Micromonas sp. RCC299 (50%)
2 1136 bp 59.07 7.83 82.92
qh_6_scaffold_3513
Species: Coccomyxa subellipsoidea (50%)
2 3360 bp 52.80 7.14 91.43
qh_6_scaffold_16579
Species: Physcomitrella patens (50%)
2 1809 bp 58.32 6.69 99.50
qh_6_scaffold_22569
Species: Klebsormidium flaccidum (50%)
2 1738 bp 55.06 6.62 52.30
qh_6_scaffold_15427
Species: Micromonas pusilla (50%)
2 1371 bp 57.62 6.64 55.80
qh_6_scaffold_23952
Species: Ostreococcus 'lucimarinus' (50%)
2 1509 bp 55.14 8.08 86.68
qh_6_scaffold_10359
Species: Jatropha curcas (50%)
2 1803 bp 49.69 6.54 38.94
qh_6_scaffold_19114
Species: Musa acuminata (50%)
2 1158 bp 57.08 6.91 86.27
qh_6_scaffold_11973
Species: Chlorella variabilis (50%)
2 2787 bp 50.13 5.74 33.48
qh_6_scaffold_20498
Species: Tetraselmis sp. GSL018 (50%)
2 1654 bp 60.70 7.80 83.25
qh_6_scaffold_30648
Species: Coccomyxa subellipsoidea (100%)
2 1351 bp 54.26 7.85 60.18
qh_6_scaffold_9793
Species: Ostreococcus 'lucimarinus' (50%)
2 1869 bp 56.50 7.28 93.58
qh_6_scaffold_6420
Species: Volvox carteri (50%)
2 2406 bp 50.83 6.28 48.88
qh_6_scaffold_8956
Species: Volvox carteri (50%)
2 3445 bp 55.85 6.94 64.27
qh_6_scaffold_8034
Species: Micromonas sp. RCC299 (50%)
2 2755 bp 55.54 7.66 57.60
qh_6_scaffold_11977
Species: Physcomitrella patens (50%)
2 1645 bp 55.02 9.12 91.55
qh_6_scaffold_12669
Species: Auxenochlorella protothecoides (50%)
2 1582 bp 60.81 6.70 94.25
qh_6_scaffold_16124
Species: Tetraselmis sp. GSL018 (50%)
2 1326 bp 56.03 6.26 88.69
Displaying items 501-550 of 1124 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.