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QH_6_Viridiplantae_55_7

QH_6_Eukaryota_55_7
In projects: QH_6

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QH_6_UNK

Properties

Avg. coverage: 6.94 Longest contig: 14.37 Kbp Bin length: 2.84 Mbp GC content: 55.11 %
Contigs count: 1124 Features count: 2738 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 27 / 55 MC: 7 BSCG 14 / 51 MC: 4 ASCG 14 / 38 MC: 4
Displaying items 451-500 of 1124 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_6841
Species: Coccomyxa subellipsoidea (50%)
2 2329 bp 54.83 7.04 71.62
qh_6_scaffold_8915
Species: Chlorella variabilis (50%)
2 1987 bp 55.11 6.74 86.21
qh_6_scaffold_11935
Species: Coccomyxa subellipsoidea (50%)
2 1648 bp 51.09 7.71 75.55
qh_6_scaffold_14008
Species: Tetraselmis sp. GSL018 (50%)
2 1470 bp 55.92 7.35 57.35
qh_6_scaffold_12166
Species: Musa acuminata (50%)
2 1627 bp 53.66 5.35 92.38
qh_6_scaffold_5460
Species: Physcomitrella patens (50%)
2 2654 bp 55.84 6.74 95.29
qh_6_scaffold_8225
Species: Ostreococcus 'lucimarinus' (50%)
2 2084 bp 56.33 6.67 85.08
qh_6_scaffold_11706
Species: Auxenochlorella protothecoides (50%)
2 2988 bp 60.17 6.59 83.63
qh_6_scaffold_6383
Species: Micromonas sp. RCC299 (50%)
2 3743 bp 50.57 6.31 77.83
qh_6_scaffold_8226
Species: Micromonas pusilla (50%)
2 2084 bp 61.18 9.45 79.46
qh_6_scaffold_9065
Species: Bathycoccus prasinos (50%)
2 2656 bp 54.10 7.64 73.42
qh_6_scaffold_16549
Species: Chlamydomonas reinhardtii (50%)
2 2243 bp 56.49 6.78 70.08
qh_6_scaffold_7078
Species: Zea mays (50%)
2 2277 bp 51.47 6.06 51.91
qh_6_scaffold_20004
Species: Micromonas sp. RCC299 (50%)
2 1536 bp 52.54 8.01 86.91
qh_6_scaffold_2254
Species: Ostreococcus tauri (100%)
2 4235 bp 57.05 6.38 86.71
qh_6_scaffold_6388
Species: Coccomyxa subellipsoidea (50%)
2 2415 bp 55.40 6.67 96.15
qh_6_scaffold_6849
Species: Micromonas pusilla (50%)
2 2328 bp 54.60 6.44 92.65
qh_6_scaffold_21158
Species: Chlorella variabilis (50%)
2 1063 bp 56.44 5.55 86.08
qh_6_scaffold_6389
Species: Chlorella variabilis (50%)
2 2415 bp 56.60 6.71 69.19
qh_6_scaffold_8462
Species: Ostreococcus tauri (50%)
2 2048 bp 54.49 7.32 87.16
qh_6_scaffold_19778
Species: Chlamydomonas reinhardtii (50%)
2 1126 bp 55.60 7.10 79.13
qh_6_scaffold_5006
Species: Monoraphidium neglectum (50%)
2 2789 bp 57.69 6.85 70.99
qh_6_scaffold_9532
Species: Chlorella variabilis (50%)
2 1903 bp 53.76 6.41 96.48
qh_6_scaffold_11944
Species: Chlamydomonas reinhardtii (50%)
2 1647 bp 55.31 6.62 97.45
qh_6_scaffold_16552
Species: Prunus persica (50%)
2 1300 bp 53.77 8.00 84.00
qh_6_scaffold_26826
Species: Coccomyxa subellipsoidea (50%)
2 1489 bp 57.35 7.05 63.06
qh_6_scaffold_3044
Species: Selaginella moellendorffii (50%)
2 4311 bp 54.28 7.54 58.80
qh_6_scaffold_10331
Species: Sorghum bicolor (50%)
2 1806 bp 63.18 7.48 97.01
qh_6_scaffold_12405
Species: Brassica napus (50%)
2 1603 bp 56.33 7.42 76.54
qh_6_scaffold_2070
Species: Ostreococcus tauri (50%)
2 5402 bp 54.31 7.42 99.52
qh_6_scaffold_4548
Species: Physcomitrella patens (50%)
2 2946 bp 49.73 7.94 57.54
qh_6_scaffold_18628
Species: Tetraselmis sp. GSL018 (50%)
2 1183 bp 57.31 8.79 62.89
qh_6_scaffold_8235
Species: Micromonas pusilla (50%)
2 2083 bp 52.23 6.77 74.46
qh_6_scaffold_17015
Species: Musa acuminata (50%)
2 1273 bp 54.36 7.70 87.90
qh_6_scaffold_12178
Species: Physcomitrella patens (50%)
2 1626 bp 57.63 7.07 35.98
qh_6_scaffold_7777
Species: Ostreococcus tauri (50%)
2 2160 bp 56.53 7.55 95.56
qh_6_scaffold_14483
Species: Selaginella moellendorffii (50%)
2 1436 bp 57.52 7.45 85.45
qh_6_scaffold_8238
Species: Tetraselmis sp. GSL018 (50%)
2 2083 bp 59.15 6.00 97.36
qh_6_scaffold_10567
Species: Micromonas sp. RCC299 (50%)
2 1783 bp 56.65 5.95 81.77
qh_6_scaffold_11258
Species: Ostreococcus tauri (50%)
2 1714 bp 54.26 8.05 48.48
qh_6_scaffold_14945
Species: Micromonas pusilla (50%)
2 1405 bp 56.65 6.69 98.01
qh_6_scaffold_20012
Species: Micromonas pusilla (50%)
2 1114 bp 59.34 5.66 58.44
qh_6_scaffold_5935
Species: Ostreococcus tauri (50%)
2 3672 bp 53.84 6.15 100.33
qh_6_scaffold_7548
Species: Micromonas sp. RCC299 (100%)
2 2199 bp 55.43 7.50 91.95
qh_6_scaffold_9308
Species: Solanum lycopersicum (50%)
2 1931 bp 52.25 7.15 67.27
qh_6_scaffold_7089
Species: Micromonas sp. RCC299 (50%)
2 2276 bp 53.38 6.85 88.97
qh_6_scaffold_7550
Species: Arabidopsis thaliana (50%)
2 2198 bp 56.28 6.78 83.67
qh_6_scaffold_14026
Species: Brachypodium distachyon (50%)
2 1469 bp 55.82 6.54 78.42
qh_6_scaffold_15870
Species: Musa acuminata (50%)
2 1342 bp 59.61 8.49 77.79
qh_6_scaffold_35025
Species: Auxenochlorella protothecoides (50%)
2 1279 bp 59.11 5.55 67.55
Displaying items 451-500 of 1124 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.