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QH_6_Viridiplantae_55_7

QH_6_Eukaryota_55_7
In projects: QH_6

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QH_6_UNK

Properties

Avg. coverage: 6.94 Longest contig: 14.37 Kbp Bin length: 2.84 Mbp GC content: 55.11 %
Contigs count: 1124 Features count: 2738 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 27 / 55 MC: 7 BSCG 14 / 51 MC: 4 ASCG 14 / 38 MC: 4
Displaying items 401-450 of 1124 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_6_scaffold_3470
Species: Zea mays (50%)
2 3383 bp 55.84 7.98 101.01
qh_6_scaffold_6122
Species: Ostreococcus tauri (50%)
2 2479 bp 53.09 7.62 82.53
qh_6_scaffold_16516
Species: Ostreococcus tauri (50%)
2 2335 bp 53.62 7.72 52.93
qh_6_scaffold_8429
Species: Bathycoccus prasinos (50%)
2 2053 bp 54.55 6.23 66.34
qh_6_scaffold_9499
Species: Coccomyxa subellipsoidea (50%)
2 1907 bp 56.95 6.40 91.24
qh_6_scaffold_15366
Species: Helicosporidium sp. ATCC 50920 (50%)
2 2374 bp 61.46 7.33 96.80
qh_6_scaffold_18130
Species: Ostreococcus tauri (50%)
2 1208 bp 59.69 7.45 88.16
qh_6_scaffold_20203
Species: Selaginella moellendorffii (50%)
2 1899 bp 59.51 6.69 98.42
qh_6_scaffold_16981
Species: Ostreococcus 'lucimarinus' (50%)
2 2094 bp 55.11 5.96 81.09
qh_6_scaffold_17903
Species: Citrus clementina (50%)
2 1220 bp 59.10 7.38 79.92
qh_6_scaffold_20206
Species: Tetraselmis sp. GSL018 (50%)
2 1106 bp 60.49 5.79 65.91
qh_6_scaffold_7511
Species: Brassica napus (50%)
2 2206 bp 55.17 6.53 88.40
qh_6_scaffold_22856
Species: Micromonas sp. RCC299 (50%)
2 1441 bp 58.15 8.61 45.59
qh_6_scaffold_2906
Species: Zea mays (50%)
2 3712 bp 55.58 6.60 91.89
qh_6_scaffold_4518
Species: Micromonas pusilla (50%)
2 2954 bp 54.84 5.92 92.01
qh_6_scaffold_14911
Species: Ostreococcus tauri (50%)
2 2026 bp 54.74 5.53 98.91
qh_6_scaffold_15141
Species: Gossypium arboreum (50%)
2 2130 bp 59.06 6.43 101.27
qh_6_scaffold_6131
Species: Tetraselmis sp. GSL018 (50%)
2 2477 bp 54.66 6.26 60.68
qh_6_scaffold_5902
Species: Cucumis sativus (50%)
2 3112 bp 56.49 8.03 98.71
qh_6_scaffold_6132
Species: Coccomyxa subellipsoidea (50%)
2 2477 bp 55.39 6.06 70.00
qh_6_scaffold_17679
Species: Micromonas sp. RCC299 (50%)
2 1233 bp 50.93 6.49 70.56
qh_6_scaffold_15606
Species: Micromonas sp. RCC299 (50%)
2 1359 bp 53.64 6.03 91.17
qh_6_scaffold_15837
Species: Volvox carteri (50%)
2 1344 bp 64.14 8.11 92.19
qh_6_scaffold_13995
Species: Picea sitchensis (50%)
2 1471 bp 54.52 6.46 85.04
qh_6_scaffold_5676
Species: Coccomyxa subellipsoidea (50%)
2 2595 bp 54.18 6.05 71.33
qh_6_scaffold_8901
Species: Micromonas sp. RCC299 (50%)
2 1990 bp 62.56 9.25 70.10
qh_6_scaffold_12612
Species: Micromonas sp. RCC299 (50%)
2 1586 bp 50.06 8.32 61.10
qh_6_scaffold_6368
Species: Chlamydomonas reinhardtii (50%)
2 2419 bp 50.56 8.27 51.96
qh_6_scaffold_20908
Species: Ostreococcus tauri (50%)
2 1074 bp 51.21 5.68 67.88
qh_6_scaffold_14919
Species: Ostreococcus tauri (50%)
2 1406 bp 53.84 6.05 86.63
qh_6_scaffold_13076
Species: Ostreococcus tauri (50%)
2 2261 bp 54.75 8.05 72.84
qh_6_scaffold_14228
Species: Erythranthe guttata (50%)
2 1454 bp 51.65 6.88 41.27
qh_6_scaffold_14459
Species: Micromonas pusilla (50%)
2 1437 bp 57.62 6.68 78.29
qh_6_scaffold_3171
Species: Ostreococcus tauri (50%)
2 3537 bp 53.07 7.27 63.61
qh_6_scaffold_18838
Species: Theobroma cacao (50%)
2 1172 bp 53.33 7.00 87.80
qh_6_scaffold_15382
Species: Ostreococcus 'lucimarinus' (50%)
2 1852 bp 57.07 6.80 74.51
qh_6_scaffold_19991
Species: Micromonas sp. RCC299 (50%)
2 1115 bp 52.02 8.61 59.46
qh_6_scaffold_6602
Species: Ostreococcus tauri (50%)
2 2371 bp 51.08 7.38 101.48
qh_6_scaffold_3856
Species: Coccomyxa subellipsoidea (100%)
2 3200 bp 55.09 6.47 74.91
qh_6_scaffold_10776
Species: Selaginella moellendorffii (50%)
2 1760 bp 55.28 7.78 78.24
qh_6_scaffold_16075
Species: Chlorella variabilis (50%)
2 1330 bp 56.47 6.24 96.99
qh_6_scaffold_27922
Species: Micromonas sp. RCC299 (50%)
2 1330 bp 54.06 7.37 78.27
qh_6_scaffold_8679
Species: Ostreococcus 'lucimarinus' (50%)
2 2017 bp 51.51 6.40 88.20
qh_6_scaffold_13080
Species: Volvox carteri (50%)
2 1546 bp 58.34 5.63 92.76
qh_6_scaffold_20222
Species: Micromonas sp. RCC299 (50%)
2 1105 bp 56.02 7.15 71.95
qh_6_scaffold_27937
Species: Coccomyxa subellipsoidea (50%)
2 1314 bp 56.39 6.93 102.74
qh_6_scaffold_10548
Species: Brassica napus (50%)
2 1785 bp 56.36 7.51 64.37
qh_6_scaffold_11239
Species: Ostreococcus tauri (50%)
2 2500 bp 57.04 5.92 97.20
qh_6_scaffold_17693
Species: Arabis alpina (50%)
2 1232 bp 52.76 9.09 94.97
qh_6_scaffold_8683
Species: Monoraphidium neglectum (50%)
2 2016 bp 57.74 7.09 90.03
Displaying items 401-450 of 1124 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.