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QH_7_Halobacteria_71_17

In projects: QH_7  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: QH_7_UNK

Properties

Avg. coverage: 16.88 Longest contig: 8.95 Kbp Bin length: 280.55 Kbp GC content: 70.66 %
Contigs count: 69 Features count: 335 rRNAs count: 0 tRNAs count: 3

Genome completeness

partial RP 21 / 55 MC: 2 BSCG 7 / 51 ASCG 10 / 38 MC: 1
Displaying items 1-50 of 69 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_7_scaffold_7120
Species: Haladaptatus paucihalophilus (50%)
2 3140 bp 69.30 23.25 95.35
qh_7_scaffold_8160
Order: Natrialbales (66.67%)
3 3095 bp 68.17 21.03 95.09
qh_7_scaffold_9262
Order: Natrialbales (50%)
4 3657 bp 70.00 20.54 90.65
qh_7_scaffold_13162
Order: Haloferacales (75%)
4 3369 bp 72.22 20.24 99.47
qh_7_scaffold_3667
Order: Natrialbales (66.67%)
3 3649 bp 72.65 20.20 96.52
qh_7_scaffold_4511
Class: Halobacteria (66.67%)
3 3177 bp 70.10 20.11 95.75
qh_7_scaffold_3122
Order: Natrialbales (60%)
5 4060 bp 69.01 20.02 90.07
qh_7_scaffold_5328
Genus: Halococcus (50%)
4 3899 bp 71.48 20.01 96.72
qh_7_scaffold_3889
Order: Natrialbales (66.67%)
6 5634 bp 70.29 19.74 77.26
qh_7_scaffold_10328
Order: Halobacteriales (60%)
5 3283 bp 73.96 19.40 93.30
qh_7_scaffold_4559
Order: Halobacteriales (50%)
4 3154 bp 69.66 19.31 90.93
qh_7_scaffold_8153
Order: Halobacteriales (83.33%)
6 3531 bp 70.74 19.17 86.66
qh_7_scaffold_6000
Class: Halobacteria (100%)
5 3822 bp 72.63 18.86 83.52
qh_7_scaffold_5193
Class: Halobacteria (60%)
5 3709 bp 72.98 18.39 90.27
qh_7_scaffold_14786 3 3060 bp 69.15 18.37 54.61
qh_7_scaffold_7862
Class: Halobacteria (66.67%)
6 6231 bp 68.66 18.37 98.51
qh_7_scaffold_10857
Order: Halobacteriales (50%)
4 3418 bp 69.34 18.31 83.29
qh_7_scaffold_1454
Order: Natrialbales (52.94%)
17 8946 bp 70.02 18.22 100.17
qh_7_scaffold_6845
Order: Natrialbales (50%)
4 4486 bp 74.45 18.17 96.03
qh_7_scaffold_15848
Class: Halobacteria (60%)
5 3713 bp 68.14 18.02 71.72
qh_7_scaffold_4890
Class: Halobacteria (66.67%)
3 3002 bp 72.88 17.92 100.03
qh_7_scaffold_5856
Class: Halobacteria (85.71%)
7 3863 bp 71.78 17.78 93.27
qh_7_scaffold_10205
Order: Natrialbales (80%)
5 3544 bp 71.98 17.72 97.60
qh_7_scaffold_9618
Order: Haloferacales (50%)
4 3625 bp 71.48 17.68 92.44
qh_7_scaffold_3999
Class: Halobacteria (77.78%)
9 5088 bp 73.45 17.53 93.69
qh_7_scaffold_7641
Order: Halobacteriales (66.67%)
3 3722 bp 69.67 17.46 77.54
qh_7_scaffold_11209
Order: Natrialbales (50%)
4 3910 bp 73.02 17.40 63.25
qh_7_scaffold_4735
Genus: Haloferax (66.67%)
3 3076 bp 73.54 17.36 90.41
qh_7_scaffold_6813
Order: Halobacteriales (100%)
4 4712 bp 71.84 17.04 86.01
qh_7_scaffold_4096
Order: Natrialbales (66.67%)
3 3393 bp 71.74 16.95 89.21
qh_7_scaffold_4897
Species: Haladaptatus paucihalophilus (50%)
4 3000 bp 71.73 16.93 86.10
qh_7_scaffold_13159
Order: Halobacteriales (75%)
8 4261 bp 72.45 16.87 77.59
qh_7_scaffold_8525
Species: Halovivax asiaticus (50%)
2 3116 bp 73.43 16.78 79.04
qh_7_scaffold_8572
Order: Halobacteriales (50%)
4 3506 bp 68.37 16.77 80.18
qh_7_scaffold_16586
Order: Halobacteriales (66.67%)
6 4188 bp 68.17 16.76 82.81
qh_7_scaffold_3297
Species: Haladaptatus paucihalophilus (50%)
4 4968 bp 72.32 16.75 94.32
qh_7_scaffold_4106
Order: Natrialbales (60%)
5 4723 bp 71.46 16.75 86.64
qh_7_scaffold_19466
Order: Natrialbales (50%)
4 3201 bp 71.38 16.71 79.38
qh_7_scaffold_9608
Class: Halobacteria (83.33%)
6 5818 bp 70.71 16.64 95.55
qh_7_scaffold_4773
Order: Halobacteriales (50%)
4 3061 bp 73.86 16.50 98.40
qh_7_scaffold_2657
Class: Halobacteria (100%)
10 5699 bp 69.35 16.42 80.28
qh_7_scaffold_6622
Species: Natronorubrum bangense (50%)
2 3148 bp 72.90 16.26 72.62
qh_7_scaffold_5222
Class: Halobacteria (83.33%)
6 4931 bp 72.34 16.20 93.33
qh_7_scaffold_7856
Species: Halomicrobium mukohataei (50%)
4 3630 bp 68.29 16.17 90.25
qh_7_scaffold_3779
Species: Halorhabdus tiamatea (50%)
4 4657 bp 72.82 16.10 86.06
qh_7_scaffold_4740
Order: Natrialbales (50%)
6 3072 bp 70.18 16.05 82.52
qh_7_scaffold_3583
Order: Halobacteriales (50%)
4 3704 bp 72.38 16.01 83.91
qh_7_scaffold_6600
Order: Halobacteriales (66.67%)
6 3635 bp 66.91 15.93 84.43
qh_7_scaffold_6521
Class: Halobacteria (50%)
6 5348 bp 70.81 15.74 89.25
qh_7_scaffold_4709
Species: Halosimplex carlsbadense (66.67%)
3 3086 bp 70.45 15.72 91.48
Displaying items 1-50 of 69 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.