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QH_7_UNK

In projects: QH_7  |  diaphorachaeota

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 25.29 Longest contig: 83.04 Kbp Bin length: 52.16 Mbp GC content: 60.76 %
Contigs count: 21495 Features count: 67681 rRNAs count: 18 tRNAs count: 616

Genome completeness

megabin RP 53 / 55 MC: 42 BSCG 42 / 51 MC: 32 ASCG 38 / 38 MC: 38
Displaying items 1-50 of 21495 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_7_scaffold_9
Class: Halobacteria (78.65%)
89 83035 bp 63.79 33.07 87.38
qh_7_scaffold_26
Class: Halobacteria (61.45%)
83 82633 bp 61.83 17.49 85.86
qh_7_scaffold_99
Class: Halobacteria (70.73%)
82 78090 bp 58.70 20.18 78.04
qh_7_scaffold_127
Class: Halobacteria (65.38%)
78 81953 bp 60.74 17.24 81.44
qh_7_scaffold_18 78 67846 bp 55.92 16.37 85.96
qh_7_scaffold_327 73 47990 bp 59.32 13.95 93.52
qh_7_scaffold_153 67 41116 bp 62.24 22.26 91.07
qh_7_scaffold_330 66 41795 bp 48.20 10.08 90.34
qh_7_scaffold_290
Domain: Bacteria (92.42%)
66 75898 bp 62.73 58.09 84.85
qh_7_scaffold_22 65 50587 bp 61.32 18.77 89.82
qh_7_scaffold_62
Class: Halobacteria (83.61%)
61 53221 bp 58.41 27.82 82.14
qh_7_scaffold_71
Class: Halobacteria (63.33%)
60 71586 bp 62.98 20.68 85.22
qh_7_scaffold_39
Class: Halobacteria (81.67%)
60 57990 bp 65.00 34.18 90.22
qh_7_scaffold_47 58 36099 bp 42.20 16.81 76.34
qh_7_scaffold_25
Class: Halobacteria (68.42%)
57 59781 bp 62.31 29.52 82.07
qh_7_scaffold_114
Domain: Bacteria (82.14%)
56 53367 bp 57.50 22.49 85.51
qh_7_scaffold_347 54 40155 bp 62.85 32.19 88.72
qh_7_scaffold_28
Class: Halobacteria (85.19%)
54 57606 bp 57.92 34.70 83.82
qh_7_scaffold_60
Class: Halobacteria (76.92%)
52 37534 bp 57.70 30.32 73.69
qh_7_scaffold_289 47 31191 bp 43.42 40.53 89.82
qh_7_scaffold_20
Class: Halobacteria (55.32%)
47 54742 bp 63.63 20.69 87.23
qh_7_scaffold_237 43 38859 bp 60.52 14.42 84.59
qh_7_scaffold_69
Class: Halobacteria (83.72%)
43 32541 bp 60.30 20.05 79.65
qh_7_scaffold_170
Class: Halobacteria (85.71%)
42 40220 bp 60.36 24.59 86.64
qh_7_scaffold_1899 42 16296 bp 44.57 38.87 89.42
qh_7_scaffold_76 40 51809 bp 45.13 38.04 93.55
qh_7_scaffold_1420
Order: Halobacteriales (55.26%)
38 30414 bp 72.90 32.27 86.86
qh_7_scaffold_136
Species: Salinibacter ruber (60.53%)
38 38624 bp 64.62 13.58 83.17
qh_7_scaffold_1000 38 15668 bp 44.80 28.89 83.04
qh_7_scaffold_838 37 30020 bp 62.23 11.43 90.93
qh_7_scaffold_108 37 30334 bp 61.19 10.97 88.26
qh_7_scaffold_369 36 25119 bp 51.75 13.35 85.56
qh_7_scaffold_902
Class: Halobacteria (77.78%)
36 28604 bp 67.23 26.52 75.55
qh_7_scaffold_973 36 22139 bp 39.40 84.77 62.91
qh_7_scaffold_193
Species: Salinibacter ruber (74.29%)
35 42592 bp 60.98 15.98 87.31
qh_7_scaffold_54
Domain: Bacteria (82.86%)
35 45219 bp 57.83 16.85 92.30
qh_7_scaffold_519
Order: Halobacteriales (51.43%)
35 39992 bp 62.10 44.04 82.72
qh_7_scaffold_182
Class: Halobacteria (82.86%)
35 43695 bp 71.48 34.38 92.94
qh_7_scaffold_1682 35 11131 bp 43.11 31.07 78.96
qh_7_scaffold_78
Class: Halobacteria (62.86%)
35 31955 bp 61.76 22.54 82.52
qh_7_scaffold_231
Order: Bacteroidetes Order II. Incertae sedis (57.14%)
35 33615 bp 64.03 14.66 78.73
qh_7_scaffold_91
Class: Halobacteria (77.14%)
35 36675 bp 62.58 19.43 84.82
qh_7_scaffold_1378 34 22688 bp 39.63 70.66 79.91
qh_7_scaffold_143
Order: Halobacteriales (58.82%)
34 31957 bp 64.59 26.79 80.07
qh_7_scaffold_93 33 42196 bp 46.51 26.05 95.02
qh_7_scaffold_209
Species: Salinibacter ruber (87.88%)
33 37915 bp 65.45 14.83 88.11
qh_7_scaffold_380
Class: Halobacteria (56.25%)
32 31632 bp 69.79 32.28 82.97
qh_7_scaffold_44
Domain: Bacteria (64.52%)
31 37999 bp 63.78 24.44 91.87
qh_7_scaffold_107 31 34696 bp 55.33 21.40 90.49
qh_7_scaffold_514
Class: Halobacteria (50%)
30 35707 bp 66.70 15.33 88.56
Displaying items 1-50 of 21495 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.