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QH_7_Viridiplantae_55_8

QH_7_Eukaryota_55_8

In projects: QH_7

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QH_7_UNK

Properties

Avg. coverage: 7.59 Longest contig: 10.49 Kbp Bin length: 2.38 Mbp GC content: 54.67 %

Contigs count: 1235 Features count: 2533 rRNAs count: 0 tRNAs count: 10

Genome completeness

partial RP 25 / 55 MC: 8 BSCG 13 / 51 ASCG 13 / 38 MC: 5

Displaying items 251-300 of 1235 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qh_7_scaffold_4888 Species: Micromonas sp. RCC299 (50%)	2	3003 bp	52.88	6.63	68.53
qh_7_scaffold_10023 Species: Brachypodium distachyon (50%)	2	1898 bp	58.59	7.11	77.61
qh_7_scaffold_16173 Species: Micromonas sp. RCC299 (50%)	2	1376 bp	66.06	5.74	88.74
qh_7_scaffold_8592 Species: Physcomitrella patens (50%)	2	2094 bp	55.21	6.88	93.27
qh_7_scaffold_11178 Species: Setaria italica (50%)	2	2659 bp	50.62	6.51	63.63
qh_7_scaffold_13712 Species: Ostreococcus 'lucimarinus' (50%)	2	1545 bp	58.19	6.80	57.28
qh_7_scaffold_14865 Species: Coccomyxa subellipsoidea (50%)	2	1462 bp	57.39	6.84	83.31
qh_7_scaffold_11409 Species: Ostreococcus tauri (50%)	2	1742 bp	57.52	5.57	80.60
qh_7_scaffold_11870 Species: Ostreococcus tauri (50%)	2	1699 bp	56.62	6.53	95.00
qh_7_scaffold_13944 Species: Ostreococcus 'lucimarinus' (50%)	2	1527 bp	56.65	6.48	76.42
qh_7_scaffold_7210 Species: Ostreococcus tauri (50%)	2	2344 bp	51.07	6.40	84.60
qh_7_scaffold_15946 Species: Leersia perrieri (50%)	2	1963 bp	52.62	6.37	93.38
qh_7_scaffold_8133 Species: Ostreococcus tauri (50%)	2	2172 bp	53.64	5.57	75.97
qh_7_scaffold_8595 Species: Oryza barthii (50%)	2	2094 bp	53.53	6.54	78.94
qh_7_scaffold_13485 Species: Micromonas pusilla (50%)	2	2007 bp	55.46	7.62	49.33
qh_7_scaffold_17372 Species: Theobroma cacao (50%)	2	1307 bp	57.46	5.97	77.12
qh_7_scaffold_6752 Species: Monoraphidium neglectum (50%)	2	2971 bp	57.59	8.11	63.01
qh_7_scaffold_8134 Species: Coffea canephora (50%)	2	2172 bp	54.14	6.63	65.33
qh_7_scaffold_13255 Species: Helicosporidium sp. ATCC 50920 (50%)	2	1579 bp	56.05	6.21	55.67
qh_7_scaffold_18813 Species: Micromonas pusilla (50%)	2	1236 bp	59.39	6.39	73.30
qh_7_scaffold_20960 Species: Coffea canephora (50%)	2	1141 bp	52.94	6.75	76.77
qh_7_scaffold_12104 Species: Prototheca wickerhamii (50%)	2	1679 bp	55.51	5.90	78.80
qh_7_scaffold_5372 Species: Micromonas pusilla (50%)	2	2834 bp	51.98	6.25	100.78
qh_7_scaffold_10262 Species: Bathycoccus prasinos (50%)	2	2743 bp	53.55	5.61	77.54
qh_7_scaffold_21702 Species: Ostreococcus 'lucimarinus' (50%)	2	2070 bp	57.78	6.76	78.12
qh_7_scaffold_22163 Species: Micromonas pusilla (50%)	2	1094 bp	52.56	6.86	64.72
qh_7_scaffold_16180 Species: Selaginella moellendorffii (50%)	2	1376 bp	54.00	5.60	51.02
qh_7_scaffold_20701 Species: Micromonas pusilla (50%)	2	2141 bp	55.82	7.01	75.67
qh_7_scaffold_22963 Species: Citrus clementina (50%)	2	1065 bp	61.22	5.73	93.24
qh_7_scaffold_11646 Species: Micromonas sp. RCC299 (50%)	2	1720 bp	54.19	6.80	86.34
qh_7_scaffold_12799 Species: Solanum tuberosum (50%)	2	1619 bp	54.79	5.50	72.27
qh_7_scaffold_4500 Species: Ostreococcus 'lucimarinus' (50%)	2	4663 bp	54.17	7.48	96.89
qh_7_scaffold_8953 Species: Chlorella variabilis (50%)	2	2044 bp	58.07	6.21	98.34
qh_7_scaffold_15491 Species: Ostreococcus 'lucimarinus' (50%)	2	1419 bp	56.17	6.27	64.69
qh_7_scaffold_23195 Species: Micromonas sp. RCC299 (50%)	2	1707 bp	51.14	5.80	93.85
qh_7_scaffold_4317 Species: Volvox carteri (50%)	2	3267 bp	55.59	5.51	94.77
qh_7_scaffold_6989 Species: Selaginella moellendorffii (50%)	2	2393 bp	55.04	7.10	78.86
qh_7_scaffold_11879 Species: Micromonas pusilla (50%)	2	1698 bp	55.54	6.77	86.22
qh_7_scaffold_9755 Species: Medicago truncatula (50%)	2	1932 bp	55.33	6.99	89.29
qh_7_scaffold_35136 Species: Oryza glumipatula (50%)	2	1397 bp	55.19	7.66	107.59
qh_7_scaffold_22397 Species: Amborella trichopoda (50%)	2	1086 bp	54.42	7.18	95.03
qh_7_scaffold_3975 Species: Ostreococcus 'lucimarinus' (50%)	2	3453 bp	54.62	6.69	98.52
qh_7_scaffold_18129 Species: Volvox carteri (50%)	2	1268 bp	54.57	7.18	37.85
qh_7_scaffold_15494 Species: Tetraselmis sp. GSL018 (50%)	2	2145 bp	52.73	5.45	49.93
qh_7_scaffold_8958 Species: Micromonas pusilla (50%)	2	2043 bp	50.81	6.95	93.25
qh_7_scaffold_20247 Species: Hordeum vulgare (50%)	2	1170 bp	52.14	6.15	69.74
qh_7_scaffold_13034 Species: Coffea canephora (50%)	2	1599 bp	56.10	5.75	84.24
qh_7_scaffold_20249 Species: Physcomitrella patens (50%)	2	1170 bp	57.86	6.15	103.33
qh_7_scaffold_4696 Species: Ostreococcus tauri (50%)	2	3092 bp	52.01	6.14	87.13
qh_7_scaffold_6533 Species: Ostreococcus tauri (50%)	2	2506 bp	54.87	5.63	92.30

Displaying items 251-300 of 1235 in total

QH_7_Viridiplantae_55_8

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

QH_7_Viridiplantae_55_8

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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