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qh_8_scaffold_232

Search features with annotation key words

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qh_8_scaffold_232_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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163..534
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2RYV7_SALRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC45410.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qh_8_scaffold_232_2
unknown

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628..735
DNA (108bp) protein (36aa)

This feature has no annotations

qh_8_scaffold_232_trna_1
unknown

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1158..1231
DNA (74bp)
transferRNA
qh_8_scaffold_232_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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1340..3307
DNA (1968bp) protein (656aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] id=24658750 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
thrS; threonyl-tRNA synthetase
qh_8_scaffold_232_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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3551..4009
DNA (459bp) protein (153aa)
infC; translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermac
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 id=24658751 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
qh_8_scaffold_232_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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4205..4402
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=2 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=RL35_SALRD
hypothetical protein
50S ribosomal protein L35 {ECO:0000255|HAMAP-Rule:MF_00514}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
qh_8_scaffold_232_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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4553..4900
DNA (348bp) protein (116aa)
50S ribosomal protein L20 n=2 Tax=Salinibacter ruber RepID=RL20_SALRD
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
qh_8_scaffold_232_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(5328..6152)
DNA (825bp) protein (275aa)
OmpA family protein
OmpA family protein id=24657196 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
OmpA family protein {ECO:0000313|EMBL:ABC44333.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (s
qh_8_scaffold_232_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(6428..7600)
DNA (1173bp) protein (391aa)
Microsomal dipeptidase {ECO:0000313|EMBL:CBH23388.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CBH23388.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermacea
Microsomal dipeptidase n=2 Tax=Salinibacter ruber RepID=D5H5T3_SALRM
microsomal dipeptidase
qh_8_scaffold_232_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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8083..8667
DNA (585bp) protein (195aa)
hypothetical protein
hypothetical protein id=24657764 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC44371.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qh_8_scaffold_232_10
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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9241..9963
DNA (723bp) protein (241aa)
LuxR family transcriptional regulator n=1 Tax=Salisaeta longa RepID=UPI0003B36AC2
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEN73606.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus
qh_8_scaffold_232_11
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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comp(10142..10870)
DNA (729bp) protein (243aa)
UPI0003A26DF1 related cluster n=1 Tax=unknown RepID=UPI0003A26DF1
trichohyalin Tax=GWA2_WOR_2_47_8_curated
hypothetical protein
qh_8_scaffold_232_12
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11293..11514
DNA (222bp) protein (74aa)
hypothetical protein id=12555060 bin=CNBR_ACIDO species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:EIT72047.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboni
hypothetical protein
qh_8_scaffold_232_13
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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11731..14133
DNA (2403bp) protein (801aa)
Transcriptional regulatory protein-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIZ5_KORVE
transcriptional regulatory protein-like
Transcriptional regulatory protein-like protein {ECO:0000313|EMBL:ABF43155.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Kori
qh_8_scaffold_232_14
Coprinopsis cinerea, Coprinopsis, Agaricales, Agaricomycetidae, Basidiomycota, Fungi

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comp(14273..14827)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI0002E5320D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAU86128.1}; TaxID=240176 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; C
qh_8_scaffold_232_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

15280..16545
DNA (1266bp) protein (422aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B653DB
signal transduction histidine kinase
qh_8_scaffold_232_16
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16868..17086)
DNA (219bp) protein (73aa)
CsbD family protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3K9Q6_9RHIZ
CsbD family protein {ECO:0000313|EMBL:EMG51940.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
protein yjbJ
qh_8_scaffold_232_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

17421..18149
DNA (729bp) protein (243aa)
transcriptional regulator n=1 Tax=Salisaeta longa RepID=UPI0003B383B7
alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Alkaline phosphatase synthesis transcriptional regulatory proteinphoP {ECO:0000313|EMBL:ABC44211.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermac
qh_8_scaffold_232_18
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

18860..20914
DNA (2055bp) protein (685aa)
Glycogen phosphorylase {ECO:0000313|EMBL:CBH23000.1}; EC=2.4.1.1 {ECO:0000313|EMBL:CBH23000.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
Glycogen phosphorylase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H4P5_SALRM
glgP; glycogen phosphorylase
qh_8_scaffold_232_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

21289..21528
DNA (240bp) protein (80aa)
Integrase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7J1_SALRM
integrase
Integrase {ECO:0000313|EMBL:CBH23996.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain M8).
Displaying 20 items

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