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qh_9_scaffold_123

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qh_9_scaffold_123_1
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(242..2251)
DNA (2010bp) protein (670aa)
DNA-binding protein MutS2 n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ITZ9_NATPD
mutS_3; DNA mismatch repair protein MutS-like protein
DNA-binding protein MutS2 {ECO:0000256|HAMAP-Rule:MF_00971}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaon
qh_9_scaffold_123_2
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(2303..3169)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DGQ1_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ33902.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum J
hypothetical protein
qh_9_scaffold_123_3
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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6525..6905
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Halobacterium sp. DL1 RepID=G4IJ64_9EURY
qh_9_scaffold_123_4
unknown

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comp(7258..7446)
DNA (189bp) protein (63aa)

This feature has no annotations

qh_9_scaffold_123_5
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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7717..8529
DNA (813bp) protein (271aa)
CRISPR-associated protein Cas6 n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PNQ2_9EURY
CRISPR-associated protein, Cas6 rbh
CRISPR-associated protein Cas6 {ECO:0000313|EMBL:ERJ06789.1}; CRISPR-associated protein, Cas6 {ECO:0000313|EMBL:CCQ33712.1}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriale
qh_9_scaffold_123_6
Halarchaeum acidiphilum, Halarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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8516..10633
DNA (2118bp) protein (706aa)
Uncharacterized protein n=1 Tax=Halarchaeum acidiphilum MH1-52-1 RepID=U3A5R2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:GAD52994.1}; TaxID=1261545 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae.;" source="Halarchaeum acidiphilum MH1-52-1.;"
CRISPR-associated protein, Csh1
qh_9_scaffold_123_7
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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10635..11720
DNA (1086bp) protein (362aa)
CRISPR-associated protein n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0LPY7_9EURY
CRISPR-associated protein {ECO:0000313|EMBL:EMA34110.1}; TaxID=1227454 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma nitratireducens JC
CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI
qh_9_scaffold_123_8
Natronobacterium gregoryi, Natronobacterium, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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11723..12517
DNA (795bp) protein (265aa)
CRISPR-associated protein Cas5, Hmari subtype n=1 Tax=Natronobacterium gregoryi (strain ATCC 43098 / CCM 3738 / NCIMB 2189 / SP2) RepID=L0AN00_NATGS
CRISPR-associated protein Cas5, subtype I-B/HMARI
CRISPR-associated protein Cas5, Hmari subtype {ECO:0000313|EMBL:ELY72599.1}; CRISPR-associated protein Cas5, subtype I-B/HMARI {ECO:0000313|EMBL:AFZ74577.1}; TaxID=797304 species="Archaea; Euryarchaeo
qh_9_scaffold_123_9
Natronorubrum sulfidifaciens, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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12519..15122
DNA (2604bp) protein (868aa)
CRISPR-associated helicase Cas3 n=1 Tax=Natronorubrum sulfidifaciens JCM 14089 RepID=L9VWC5_9EURY
CRISPR-associated helicase Cas3 {ECO:0000313|EMBL:ELY41479.1}; TaxID=1230460 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum sulfidif
helicase
qh_9_scaffold_123_10
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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15119..15691
DNA (573bp) protein (191aa)
CRISPR-associated protein Cas4 n=1 Tax=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) RepID=Q5V7X0_HALMA
cas4; CRISPR-associated Cas4 family protein
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:AAV44425.1}; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula marismortu
qh_9_scaffold_123_11
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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15694..16686
DNA (993bp) protein (331aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halob
CRISPR-associated endonuclease Cas1 n=1 Tax=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) RepID=Q5V7X5_HALMA
cas1; CRISPR-associated Cas1 family protein
qh_9_scaffold_123_12
Halarchaeum acidiphilum, Halarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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16677..16952
DNA (276bp) protein (92aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1261545 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales;
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Halarchaeum acidiphilum MH1-52-1 RepID=U3A865_9EURY
cas2; CRISPR-associated Cas2 family protein
qh_9_scaffold_123_13
unknown

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17788..17994
DNA (207bp) protein (69aa)

This feature has no annotations

qh_9_scaffold_123_14
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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20462..20848
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KY56_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMA26207.1}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula amylolytica JCM
qh_9_scaffold_123_15
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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21022..22701
DNA (1680bp) protein (560aa)
Thermosome subunit 2 n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XNL0_NATM8
ths2; thermosome subunit 2
Thermosome subunit 2 {ECO:0000313|EMBL:CCQ35507.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moolapensis (str
qh_9_scaffold_123_16
unknown

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22913..23776
DNA (864bp) protein (288aa)

This feature has no annotations

qh_9_scaffold_123_17
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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23783..24823
DNA (1041bp) protein (347aa)
arcB; ornithine cyclodeaminase (EC:4.3.1.12)
Alanine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00935}; Short=AlaDH {ECO:0000256|HAMAP-Rule:MF_00935};; EC=1.4.1.1 {ECO:0000256|HAMAP-Rule:MF_00935};; TaxID=348780 species="Archaea; Euryarchaeota; Ha
Alanine dehydrogenase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IU68_NATPD
qh_9_scaffold_123_18
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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24915..29327
DNA (4413bp) protein (1471aa)
Replication factor C small subunit n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PGH3_9EURY
replication factor C small subunit
Replication factor C small subunit {ECO:0000313|EMBL:CCQ33862.1}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tia
qh_9_scaffold_123_19
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(29428..30108)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KQD2_HALAR
Uncharacterized protein {ECO:0000313|EMBL:EMA23426.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentinensis DS
hypothetical protein
qh_9_scaffold_123_20
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(30105..31019)
DNA (915bp) protein (305aa)
GAF sensor protein n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KQ21_HALAR
GAF sensor protein {ECO:0000313|EMBL:EMA23427.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentinensis DSM 122
GAF sensor protein
qh_9_scaffold_123_21
Halovivax asiaticus, Halovivax, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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31284..32750
DNA (1467bp) protein (489aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017576}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017588};; Alanyl-tRNA synthetase {ECO:0000256
Alanine--tRNA ligase n=1 Tax=Halovivax asiaticus JCM 14624 RepID=M0BL72_9EURY
alanine--tRNA ligase/alanyl-tRNA synthetase
qh_9_scaffold_123_22
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

32747..33880
DNA (1134bp) protein (378aa)
alaS; alanine--tRNA ligase (EC:6.1.1.7)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017576}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00017588};; Alanyl-tRNA synthetase {ECO:0000256
Alanine--tRNA ligase n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1Y551_NATM8
Suspect SCG annotation. See neighboring gene [qh_9_scaffold_123_21].
qh_9_scaffold_123_23
unknown

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comp(33719..34036)
DNA (318bp) protein (106aa)

This feature has no annotations

qh_9_scaffold_123_24
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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34256..34441
DNA (186bp) protein (62aa)
30S ribosomal protein S8e n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IN16_NATPD
rps8R; 30S ribosomal protein S8e
30S ribosomal protein S8e {ECO:0000256|HAMAP-Rule:MF_00029, ECO:0000256|SAAS:SAAS00018121}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.
Displaying 24 items

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