ggKbase home page

qs_1_scaffold_202

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
qs_1_scaffold_202_1
Gammaproteobacteria bacterium MFB021, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..120
DNA (120bp) protein (40aa)
Gluconate transporter {ECO:0000313|EMBL:KFF50067.1}; TaxID=1492922 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium MFB021.;"
qs_1_scaffold_202_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(197..2839)
DNA (2643bp) protein (881aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952, ECO:0000313|EMBL:CBH24218.1};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=761659
DNA topoisomerase I n=1 Tax=Salisaeta longa RepID=UPI0003B35DA8
topA; DNA topoisomerase I
qs_1_scaffold_202_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(3128..3829)
DNA (702bp) protein (234aa)
dpsA; starvation induced DNA binding protein id=24659058 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
dpsA; starvation induced DNA binding protein
Starvation induced DNA binding protein {ECO:0000313|EMBL:CBH24217.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Sa
qs_1_scaffold_202_4
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

4114..4734
DNA (621bp) protein (207aa)
superoxide dismutase copper/zinc binding protein; K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI000368BA9F
Cu/Zn superoxide dismutase
qs_1_scaffold_202_5
unknown

Not on your lists

comp(5044..5298)
DNA (255bp) protein (85aa)

This feature has no annotations

qs_1_scaffold_202_trna_2
unknown

Not on your lists

comp(5547..5619)
DNA (73bp)
transferRNA
qs_1_scaffold_202_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(6069..6497)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B58813
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH25101.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_1_scaffold_202_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(6526..7413)
DNA (888bp) protein (296aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; Short=CMK {ECO:0000255|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000255|HAMAP-Rule:MF_00061};; 4-(cytidine-5'-dipho
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=2 Tax=Salinibacter ruber RepID=ISPE_SALRD
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
qs_1_scaffold_202_8
unknown

Not on your lists

comp(7504..7983)
DNA (480bp) protein (160aa)

This feature has no annotations

qs_1_scaffold_202_9
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(8304..8789)
DNA (486bp) protein (162aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MEJ9_RHOM4
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
qs_1_scaffold_202_10
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(8924..10777)
DNA (1854bp) protein (618aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI0003639D80
amino acid/peptide transporter
Amino acid/peptide transporter {ECO:0000313|EMBL:AEN74241.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodotherm
qs_1_scaffold_202_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


11170..13089
DNA (1920bp) protein (640aa)
Aspartate--tRNA(Asp/Asn) ligase {ECO:0000255|HAMAP-Rule:MF_00044}; EC=6.1.1.23 {ECO:0000255|HAMAP-Rule:MF_00044};; Aspartyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00044}; Short=AspRS {ECO:0000255|
Aspartate--tRNA ligase n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=SYD_SALRD
aspS; aspartyl-tRNA synthetase
qs_1_scaffold_202_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(13404..15470)
DNA (2067bp) protein (689aa)
UvrABC system protein B n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H8A7_SALRM
uvrB; UvrABC system protein B
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_0
qs_1_scaffold_202_13
unknown

Not on your lists

15497..16123
DNA (627bp) protein (209aa)

This feature has no annotations

qs_1_scaffold_202_14
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16076..17191)
DNA (1116bp) protein (372aa)
Site-specific recombinase XerD id=4043437 bin=GWC2_Deltaproteobacteria_56_8 species=Desulfovibrio sp. U5L genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
integrase family protein Tax=GWB2_Deltaproteobacteria_55_19_curated
integrase family protein
qs_1_scaffold_202_15
RBG_16_Armatimonadetes_58_9_curated, Armatimonadetes, Bacteria

Not on your lists

comp(17225..17464)
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8G9I5_9CYAN
hypothetical protein Tax=RBG_16_Armatimonadetes_58_9_curated
Protein of unknown function DUF2283
qs_1_scaffold_202_16
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

comp(17482..17739)
DNA (258bp) protein (86aa)
hypothetical protein n=2 Tax=unclassified Zetaproteobacteria RepID=UPI00037B785B
hypothetical protein Tax=CG_Arma_02
qs_1_scaffold_202_17
unknown

Not on your lists

comp(17736..18017)
DNA (282bp) protein (94aa)

This feature has no annotations

qs_1_scaffold_202_trna_1
unknown

Not on your lists

comp(18989..19062)
DNA (74bp)
transferRNA
qs_1_scaffold_202_18
Xenococcus sp. PCC 7305, Xenococcus, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

comp(19180..20433)
DNA (1254bp) protein (418aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransfera
hypothetical protein n=1 Tax=Synechococcus sp. PCC 7336 RepID=UPI00034DDD71
kbl; 2-amino-3-ketobutyrate coenzyme A ligase
qs_1_scaffold_202_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(20491..21507)
DNA (1017bp) protein (339aa)
Epimerase/reductase, putative n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S5K3_SALRD
epimerase/reductase
Epimerase/reductase, putative {ECO:0000313|EMBL:CBH23380.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
qs_1_scaffold_202_20
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(21690..23903)
DNA (2214bp) protein (738aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H8L9_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24374.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
qs_1_scaffold_202_21
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(23908..24768)
DNA (861bp) protein (287aa)
Deoxyadenosine kinase {ECO:0000313|EMBL:AEN74238.1}; EC=2.7.1.76 {ECO:0000313|EMBL:AEN74238.1};; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedi
deoxynucleoside kinase n=1 Tax=Salisaeta longa RepID=UPI0003B3D3C1
deoxynucleoside kinase
qs_1_scaffold_202_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(24960..25511)
DNA (552bp) protein (184aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Sa
phosphoesterase
phosphoesterase; K07095 id=24657865 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
qs_1_scaffold_202_23
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25905..26309
DNA (405bp) protein (135aa)
Glycine betaine/L-proline ABC transporter, ATPase subunit n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LZH0_HALO1
glycine/betaine/L-proline ABC transporter ATPase
Glycine betaine/L-proline ABC transporter, ATPase subunit {ECO:0000313|EMBL:ACY17949.1}; TaxID=502025 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae
Displaying 25 items

View Taxonomy